Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03930 ATGAGTCAGCAGGGACATGAAGGAGTAGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCTACTACCAACAGAGAAATTGATGGCCAAATACCTAATTATCCGAGTTTGCCGCCTCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGTTACAGCCGTTGACTCCGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTGGGGATTCCAAGTAAGCAGCCTTCAAACTATTTTTGCAAGACATTGACAGCGAGTGATACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCATTGGATTTCTCACAGCAACCTCCTGCACAAGAACTAATTGCTAGGGATCTCCACGACGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACCACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTAGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAAAATCAGCTTCTTTTGGGAATCCGTCGAGCTAGTCGGCCACAAACTGTTATGCCATCATCAGTTCTTTCGAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACAGTGTTCTTTAATCCAAGGGCAAGTCCATCCGAGTTTGTCATACCACTTTCAAAATATATAAAAGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGCTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTGCGCAGGTACATGGGTACCATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCGAATTCTCATTGGAGATCTGTTAAGGTCGGTTGGGATGAATCAACAGCTGGGGAGAGACAGCCACGTGTATCGTTATGGGAAATCGAGCCTTTAACAACGTTTCCAATGTATCCATCTCTATTTCCTCTTAGATTGAAACGACCATGGCATCCCGGCTCTTCTTCTTTTCTTGATGGCAGAGACGAAGCAACAAATGGGCTAATGTGGCTGAGAGGCGGTCCTGGAGACCAAGGTCTTAATTCCATGAATTTTCAAGGTGCTGGATTGTTGCCCTGGATGCAGCAGAGAATGGATCCAGCTTTACTCGGAAATGATCATAACCAATACCAAGCCATGTTGGCTGCCGCTGGTTTGCAGAATCAAGGGCATGTAGATCTTTTGAGGCAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAATCTCAGTCCTTTGCAGCTTCAGCAACAGCAAGCAATTCAACAATCTGTGTCGACCAATATCCTTCAACCACAAGGCCAAGTATTGGCACACAACAATCGAGAAAACCAAGCACAGCAACCTCAACAGCAACACACTTATCAAGATTCACTCTTAATTCAAGGTGATCCACTCCATCAGAAGCAACACTCTAGTTTGCCATCACCGTCATATTCAAAACATGATTTCTTAGATTCAGGCATGAAGTTTACTGCTTCAGCTTCGCCTAGTCAAAACATGCTCGGTTCACTTTGTTCTGAAGGGAGTGGAAATCTCTTGAATTTATCAAGAAGTGGTCACTCTATGCTGACTGAACAGTTACCTCAGCAATCATGGGAATCGAAGTATTCACCTTCGCAGGTCGATGGCATTGGAAACTCAATGTCGCATGTGCAGTATTCTGGGAGAGATACAGCAATTGTACCACCGCATTGCACCTCAGATTCCCAAAATTCTGTTCTGTTTGGGGTCAATATCGATTCGTCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACTACTGCATCCGCTGATGCCGATGCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCCATATCCTTGCATGCAGGATTCATCAGAGTTGTTGCAAAGTGCGGGGCAGATTGATGCTCAAAACCAGATGCCGACATTTGTGAAGGTATACAAATCAGGTTCGGTAGGGCGCTCACTTGACATCTCGCGGTTCAGCAGCTATCACGAGCTGCGGGAGGAGTTGGCACAGATGTTTGGAATTGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATTCTTTCTCCTGAAGATATTCAGAAAATGGGAGAACAAGCCATAGAATCCCTTGGTCCAAGTTCTGGACAAAGGCCGAATAACACTGGTGCAGAATCTCACGATATTGTTTCTGGACTACCATCATTAGGCTCACTTGATTACTGA 2481 0.449 MSQQGHEGVEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSFLDGRDEATNGLMWLRGGPGDQGLNSMNFQGAGLLPWMQQRMDPALLGNDHNQYQAMLAAAGLQNQGHVDLLRQQMMNFQQPFNYLQQSGNLSPLQLQQQQAIQQSVSTNILQPQGQVLAHNNRENQAQQPQQQHTYQDSLLIQGDPLHQKQHSSLPSPSYSKHDFLDSGMKFTASASPSQNMLGSLCSEGSGNLLNLSRSGHSMLTEQLPQQSWESKYSPSQVDGIGNSMSHVQYSGRDTAIVPPHCTSDSQNSVLFGVNIDSSGLLLPTTVPRYTTASADADASTMPLGESGFQGSPYPCMQDSSELLQSAGQIDAQNQMPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAIESLGPSSGQRPNNTGAESHDIVSGLPSLGSLDY 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03930 826 SUPERFAMILY CAD & PB1 domains 700 774 - -
Trre10g03930 826 Pfam AUX/IAA family 694 784 IPR033389 -
Trre10g03930 826 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 789 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre10g03930 826 SMART B3_2 121 223 IPR003340 GO:0003677
Trre10g03930 826 CDD B3_DNA 120 221 IPR003340 GO:0003677
Trre10g03930 826 Gene3D - 695 789 - -
Trre10g03930 826 SUPERFAMILY DNA-binding pseudobarrel domain 105 250 IPR015300 -
Trre10g03930 826 FunFam Auxin response factor 285 357 - -
Trre10g03930 826 MobiDBLite consensus disorder prediction 795 826 - -
Trre10g03930 826 Gene3D - 119 222 IPR015300 -
Trre10g03930 826 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Trre10g03930 826 FunFam Auxin response factor 695 789 - -
Trre10g03930 826 MobiDBLite consensus disorder prediction 795 813 - -
Trre10g03930 826 FunFam Auxin response factor 119 223 - -
Trre10g03930 826 Pfam Auxin response factor 247 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre10g03930 826 Gene3D - 285 357 - -
Trre10g03930 826 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Trre10g03930 826 ProSiteProfiles PB1 domain profile. 700 784 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03930 Trre-Chr10 48648996 48656500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03930 91 797 B3 DNA Binding Superfamily AT5G37020 66.988 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre10g03930 AUX_IAA 8.8e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03930 - - gmx:100784804 1446.03