Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03926 ATGCCTCTTTATGAGTTATACCGTATGGCTAGAGAGAAGCTTGGTAATGAGACTAATAATAGCACAAGTGTAGCTGATCAACCTTCCTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGTCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTACCATCTCACTGCTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGACGTAGGAGGAGGAGGAGGATATGGTAATAACAATCCTAAGATAGGAAAATTTTGTGATTTAGACTCTGGATTGAATGGGATTCCAATGTCGGTGCCATCTCGTGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCAATAGATGGTTCTTTTCAAACTGAATATGGTTCTGATTTCTTACATGAACTTACGGAGAATGATGACCTTCCCGCCTCGAATAATTTTACTCTATTGGAGAAAAGGAGTAACGGTGGTAATCAGATGTTTAGGGACTCTCATAAAAATTCTGCAGAACCGGTGAATGTTTCTAAGGATTCTTCGGCTGAACAGGTTGAGACTGCAAGACATAAAGATAGCACAAGTCAGTTATATCTGCCATCATCGAATCAATGTCAAACATCATTTGTAACTGTTAGATCCGGGGAATCGAATATAACTGAGAATAACAATCCAAGTAATGGTAACCAGGGTGTGCCTTACAGTGAAATTGATCGTATTCCATCTTCATCGAGCGATTTTTCTAGCTTAAAAGTGCAGAAGCAAGATCCTATATTGCCTGGCAATGTTTCCAATGTAATGAATTTTTCCCATTTCGCAAGGCCTGCTGCTATTGTGAGAGCTAATCTTCAGAACATCGGCATGAAGTCTAGTTTGAATTCAGCTTCCGCAAGATCAAATAGTATGGGAATTAAGAATAGAGGCGAAGCTTCGACTAGCAGCAATCCCACCGAGTCAACTCTTGTTAATTCCAGCGGTGAATGTTCAAAGGAACCGGTAATGCATTGTCAGAAGGTGGTGGAGCAATCTAAGGCTAACTTGAAACCTTTGCAGCCGAAATCTCTTGAACTGAACACTTTAGCTTCTAAACAATCGGAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGACCAGCGTTCCAATCAAGTTCTTGGTGACGGTGGCGCTAAAGGACAAACAGGTGCTGAAAAAGGTATGGAGGCGGCCGTAGCCTCTTCTTCTATTTGCTCTGGTAATGGTGCAGATAGAGGCTCGGATGATCTGAATCGAGATTTGAAACGGAAAAGTAGAGACACTGAGGACTCCGAATGTCATAGTGAAGATGTTGAGGATGAATCAGTGGGTGTTAAAAAGGGAGGTTTGGGACGAGGAGTTGCAGGTTCCAAAAGAAGTCGCGCTGCTGAAGTGCATAACCTATCCGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTACAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGACGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCACAAATGATGTTACCTCCTGGAATGCAGCACATGCATGCGCCACACATGGCTGCATTTTCACCTATGGGCATTGGCATGCATATGGGATTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGGATCTTCTAGATATCCAATGATGCAGGTGCCTCCTCAGATGCAAGGAACTCATATTCCTGTTGCACATATGTCCGGACCTTCTGCTATGCATGGAATGGCCAGATCAAATCCTCAAGGGTTTGGACTTCCGGGTCAGGGAGTTTCCATGCCAATGCCGCGTGGTCATGGATTTCCTTTTACGGGAGGGCCTCTTATGAATTCTGCGTATGGATCCACAGGAACTGTTGAAACTGTGAATCCAGCTTCAGCATCTGGCTCAAAAGATCCAATGCAAAATGTGGACTCACAGATTAAGCAAAACACTGGTGGACGTGACTCTACAAGCCAGATTCCTAATCAGTCGGCTTTGGTGCATAATGGTGGTCATGCCTCAGTGGCTGATGACAGTGGAGCTGCTAATCCTGGCAATATCACTTTATGA 2157 0.4335 MPLYELYRMAREKLGNETNNSTSVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPRGRDKDVGGGGGYGNNNPKIGKFCDLDSGLNGIPMSVPSREVDEMMPWLDYSIDGSFQTEYGSDFLHELTENDDLPASNNFTLLEKRSNGGNQMFRDSHKNSAEPVNVSKDSSAEQVETARHKDSTSQLYLPSSNQCQTSFVTVRSGESNITENNNPSNGNQGVPYSEIDRIPSSSSDFSSLKVQKQDPILPGNVSNVMNFSHFARPAAIVRANLQNIGMKSSLNSASARSNSMGIKNRGEASTSSNPTESTLVNSSGECSKEPVMHCQKVVEQSKANLKPLQPKSLELNTLASKQSEPACKENGIKNDQRSNQVLGDGGAKGQTGAEKGMEAAVASSSICSGNGADRGSDDLNRDLKRKSRDTEDSECHSEDVEDESVGVKKGGLGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPPGMQHMHAPHMAAFSPMGIGMHMGLGMGYGMGMPDMNGGSSRYPMMQVPPQMQGTHIPVAHMSGPSAMHGMARSNPQGFGLPGQGVSMPMPRGHGFPFTGGPLMNSAYGSTGTVETVNPASASGSKDPMQNVDSQIKQNTGGRDSTSQIPNQSALVHNGGHASVADDSGAANPGNITL 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03926 718 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 533 IPR036638 GO:0046983
Trre10g03926 718 MobiDBLite consensus disorder prediction 422 455 - -
Trre10g03926 718 Gene3D - 465 528 IPR036638 GO:0046983
Trre10g03926 718 MobiDBLite consensus disorder prediction 299 332 - -
Trre10g03926 718 MobiDBLite consensus disorder prediction 14 33 - -
Trre10g03926 718 MobiDBLite consensus disorder prediction 14 30 - -
Trre10g03926 718 Pfam Helix-loop-helix DNA-binding domain 474 520 IPR011598 GO:0046983
Trre10g03926 718 CDD bHLH_AtPIF_like 470 532 IPR047265 -
Trre10g03926 718 MobiDBLite consensus disorder prediction 46 87 - -
Trre10g03926 718 MobiDBLite consensus disorder prediction 161 187 - -
Trre10g03926 718 MobiDBLite consensus disorder prediction 369 479 - -
Trre10g03926 718 FunFam Basic helix-loop-helix transcription factor 465 528 - -
Trre10g03926 718 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Trre10g03926 718 PANTHER TRANSCRIPTION FACTOR PIF3 1 688 IPR044273 GO:0003700|GO:0006355
Trre10g03926 718 MobiDBLite consensus disorder prediction 221 253 - -
Trre10g03926 718 MobiDBLite consensus disorder prediction 651 698 - -
Trre10g03926 718 MobiDBLite consensus disorder prediction 299 333 - -
Trre10g03926 718 MobiDBLite consensus disorder prediction 46 66 - -
Trre10g03926 718 SMART finulus 476 525 IPR011598 GO:0046983
Trre10g03926 718 MobiDBLite consensus disorder prediction 651 718 - -
Trre10g03926 718 MobiDBLite consensus disorder prediction 369 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03926 Trre-Chr10 48585430 48588466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03926 1 588 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.365 6.33e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g03926 HLH 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03926 K12126 - gmx:100794974 938.717