Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03924 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGTTAAGGAAAGGTCTTTGGTCTCCAGAAGAAGATGAGAAACTTCTCAATTACATTACCAAACATGGTCATGGATGTTGGAGTTCAGTCCCTAAACTAGCTGGATTGCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATTTGAGGCCTGATTTGAAAAGAGGAGCATTTTCACAACAGGAAGAGAATTTGATCATTGAACTTCATGCAGTACTTGGTAACAGATGGTCTCAGATTGCGGCACAATTACCAGGAAGAACAGACAATGAGATTAAAAATCTATGGAATTCATGTCTCAAGAAAAGGTTGAGACAAAGTGGCATTGATCCAAACACTCATAAACCACTTTGTGAGATTGAAAATCATGACAATGAAAAACCAAACAAAAGTAATCATCAAAAAGCCTCAGTTTCATCCAATGAAGTTATGAATTTGGTAATTGAACCTACAAAAACTTCTCTAGAAGGATACCCTCTAGAAGTTTCAACAAGCTCTAAGATCAACAACAGTACTAGTAGCAGCCATGAATTATTCCTAGATACTACCAGGTTTGGTTCTACAGGTTATTTTTCTTTTCAGAACTTGAACTTTGGATCAAACATAGGAATTTCTGATCAAAATCCAAATGCATCTATTTGTTTCACACCAACTTCAACTACTTCTTCACAAATGATTACAGATAACAACAATTCTGTTATAAACTCGAATATTCTCCATTCTGTTTCAAACTCAATTTTCCAAACTCCAACACAAGTAAAACCAACTGTTTCCGTTTCCTCGGACGGAGTTCATAACTGGGAATCAGCAAGTAACTACAGCAACATTAACAACACGAACAAAACCGCTGGAAACAGCGGCGTAAACTTCCTTGACAACGGCGCTGCTGTACCGTTACAAGAAGAAATGAAATGGTCTGAGTATCTTAACACACCATTTCTTATGCAGAATCAACCTTCTCAATCTATGTACACTGAGAATAAACCAGAAACAGGTTTCATAACAGATGAGTCATGTACTAGTTGGCAGCAACAACAATCAAGTTTTCAACTATCTGATATATATAGCAAAGATCTGCAGAGATTCTCAGTGGCTTTTGGACAAACTCTGTAG 1149 0.3725 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPNTHKPLCEIENHDNEKPNKSNHQKASVSSNEVMNLVIEPTKTSLEGYPLEVSTSSKINNSTSSSHELFLDTTRFGSTGYFSFQNLNFGSNIGISDQNPNASICFTPTSTTSSQMITDNNNSVINSNILHSVSNSIFQTPTQVKPTVSVSSDGVHNWESASNYSNINNTNKTAGNSGVNFLDNGAAVPLQEEMKWSEYLNTPFLMQNQPSQSMYTENKPETGFITDESCTSWQQQQSSFQLSDIYSKDLQRFSVAFGQTL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03924 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre10g03924 382 MobiDBLite consensus disorder prediction 128 143 - -
Trre10g03924 382 SMART sant 66 114 IPR001005 -
Trre10g03924 382 SMART sant 13 63 IPR001005 -
Trre10g03924 382 FunFam MYB transcription factor 68 140 - -
Trre10g03924 382 MobiDBLite consensus disorder prediction 123 153 - -
Trre10g03924 382 PANTHER MYB DOMAIN PROTEIN 55 1 319 - -
Trre10g03924 382 CDD SANT 17 61 IPR001005 -
Trre10g03924 382 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre10g03924 382 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre10g03924 382 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre10g03924 382 Gene3D - 69 153 - -
Trre10g03924 382 FunFam Myb transcription factor 11 67 - -
Trre10g03924 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre10g03924 382 CDD SANT 69 109 IPR001005 -
Trre10g03924 382 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre10g03924 382 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre10g03924 382 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03924 Trre-Chr10 48536718 48538042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03924 1 382 MYB Transcription Factor Family AT1G09540 47.458 2.36e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g03924 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03924 K09422 - gmx:778072 460.685