Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03918 ATGGGTATTAAGGGTTTAACGAAGCTTTTAGCTGACAATGCCCCAAAATCCATGAAGGAGAACAAATTCGAGAGCTATTTTGGCCGAAAGATCGCTGTTGATGCCAGCATGAGCATTTACCAGTTTCTTATTGTTGTGGGAAGAAGTGGAACGGAAATGCTGACTAATGAAGCCGGCGAAGTTACTAGTCATTTGCAAGGAATGTTTTCGCGGACAATCAGACTTCTAGAAGCGGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCGGAGATGAAGAATCAAGAGCTGAAAAAACGGCTTTCAAAGAGAGCTGAGGCTACCGCGGGTTTGTCAGAAGCTCTAGAGACTGATAATAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGACAAAGCAACATAATGATGACTGCAAAAGACTTTTAAGACTCATGGGAGTCCCTGTTGTTGAGGCACCCTCTGAAGCAGAGGCTCAGTGTGCTGCTCTTTGCAAAGCTGGAAAGGCAAGTTCACATCTGCTTTGTGTTTATGCTGTGGCTTCTGAAGACATGGACTCCTTAACGTTTGGAGCTCCTAAGTTCCTTCGCCATCTAATGGATCCTAGCTCAAAGAAGGTTCCAGTAATGGAATTTGACATTGCAAAGATTTTGGAGGAGCTAAATCTGACCATGGATCAATTTATTGACTTATGTATTCTTTCTGGGTGTGATTACTGTGACAACATTCGAGGTATTGGGGGGCTAACAGCTTTGAAGCTCATACGCCAACATGGCTCTATTGAAAATATACTGGAAAACCTAAGCAAAGAGAGGTACCAGATACCAGATGATTGGCCGTATCAGGAGGCTCGACGACTTTTTAAAGAACCAGACGTCTCAACTGATGATGAAGTACTTAATCTTAAGTGGTCTCCTCCAGATGAAGAAGGGTTAATAACATTTCTAGTAAATGAGAATGGGTTCAACAGTGACAGGGTGACAAAGGCTATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCCAACTGCAAATCCATCTGTACCTATCAAACGGAAGGAAAGCAAATGCATGCTTAGATCATTCAAACCAGCAATTGATCATAAGATGTCCTCTCTGCGAATTTCTAACCAGTCAAGGCCCGTGGGTTTCGGCAAGTTGAGCATGCCGATCTATAATATTGGTTCCAAGCTTTCAGTGCCTTTGTCTAAAGGTGTATGCTTTGGTTCCTGA 1272 0.4245 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLSEALETDNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKASSHLLCVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFDIAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIENILENLSKERYQIPDDWPYQEARRLFKEPDVSTDDEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKESKCMLRSFKPAIDHKMSSLRISNQSRPVGFGKLSMPIYNIGSKLSVPLSKGVCFGS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03918 423 SMART xpgn3 1 108 IPR006085 GO:0004518
Trre10g03918 423 FunFam Flap endonuclease 1 10 229 - -
Trre10g03918 423 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Trre10g03918 423 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 374 IPR006084 -
Trre10g03918 423 SMART HhH_4 228 261 IPR008918 GO:0003677|GO:0003824
Trre10g03918 423 Pfam XPG I-region 150 241 IPR006086 GO:0004518
Trre10g03918 423 Hamap Flap endonuclease 1 [fen]. 1 354 IPR023426 GO:0016788
Trre10g03918 423 CDD PIN_FEN1 4 339 - -
Trre10g03918 423 FunFam Flap endonuclease 1 226 293 - -
Trre10g03918 423 SMART 53exo3 29 308 IPR002421 GO:0003677
Trre10g03918 423 SUPERFAMILY PIN domain-like 2 241 IPR029060 -
Trre10g03918 423 Gene3D - 2 225 - -
Trre10g03918 423 CDD H3TH_FEN1-Euk 229 296 - -
Trre10g03918 423 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Trre10g03918 423 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 226 361 IPR036279 -
Trre10g03918 423 Gene3D - 226 293 - -
Trre10g03918 423 SMART xpgineu 147 226 IPR006086 GO:0004518
Trre10g03918 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 231 246 IPR006084 -
Trre10g03918 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Trre10g03918 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Trre10g03918 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03918 Trre-Chr10 48464689 48468543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03918 1 419 Core DNA Replication Machinery Family AT5G26680 78.282 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03918 K04799 - zju:107411672 680.248