Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03914 ATGTCGGCTTCGAGGCCTAGCCAATCATCTAACAATTCAGGGAGATCAAGAAATAGTGCTAGGATTATTGCTCAGACAACTGTAGATGCAAAGCTTCATGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGACTATTCCAGTTCGGTGCGAGTTTCTGGCTCAGTTGATGGAGATCATCAACCGAGGTCTAACAAAGTAACAACAGCTTACCTCAATCACATACAGAGAGGTAAGCAGATCCAGCCTTTCGGGTGTTTGCTAGCTCTGGACGAGAAAACGTGCAAGGTCATTGCGTACAGTGAGAATGCACCTGAAATGCTGACCATGATGAGTCATGCTGTTCCTAGTGTCGGTGACCACCCTGCCCTTGGCATTGGAACTGACATAAGGACTATCTTCACTGCACCGAGTGCTTCTGCCTTACAAAAGGCACTAGGATTTGCGGAGGTTTCACTTCTTAACCCTATCCTAGTTCATTGCAAGACTTCTGGGAAGCCGTTTTATGCTATCATCCATCGTGTTACCGGTAGTTTGATCATTGACTTTGAGCCGGTGAAGCCTTATGAAGTTCCCATGACTGCAGCGGGCGCCTTGCAATCTTATAAGCTTGCTGCTAAAGCAATTACAAGACTGCAATCTTTGCCTAGTGGCAGCATGGAAAGGCTTTGCGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGACGACCACGGGGAGGTGATCTCTGAAATAGCAAAGCCAGGTCTAGAGCCATACCTAGGTTTGCACTATCCGGCCACAGATATTCCCCAGGCTGCACGTTTTTTATTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTCATGCAAAACATGTGAAGGTTCTTCAAGATGAAAAACTCCCGTTCGATTTAACTTTGTGTGGTTCAACCTTAAGGGCTCCGCATAGTTGTCATCTGCAGTACATGGCTAACATGGATTCAATTGCTTCATTGGTTATGGCAGTAGTAGTAAATGACAGTGATGAAGATGGAGACAGCGCTGATGTAGTTCTCCCACAGAAGAAAAAGAGACTTTGGGGTTTGGTAGTTTGTCATAACACTACTCCAAGGTTTGTTCCCTTTCCTCTAAGGTATGCTTGTGAATTCCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAAATAGAGTTAGAATGTCAAATTCTTGAGAAGAATATCCTGCGCACGCAGACGCTGTTATGTGATATGCTGATGCGAGATGCACCCTTAGGTATTGTATCACAAAGTCCTAATATAATGGATCTAGTGAAATGTGATGGGGCAGCCCTATTGTATAAAAACAAGTTATGGATATTAGGAGCGACGCCGAGTGAACCTCAGATAAGAGAAATAGCTTTATGGATGTCCGAGTACCACACGGATTCCACAGGTTTGAGTACGGATAGCTTGTCTGATGCAGGGTTTCCAGGGGCTCTTAAACTTAGTGATACGGTATGTGGAATGGCAGCTGTTAGAATAACTTCAAAAGACATAGTGTTCTGGTTTAGGTCGCCCACTTCTGCAGAAATCCGATGGGGTGGCGCAAAGCATGAACCTGGCGAACAAGATGATGGTAGGAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGGCTAGGAGCATACCGTGGAAAGATTTTGAAATGGACGCTATTCATTCGTTGCAGTTAATACTGAGAAATGCATCCAAAGATACAGCGATTATTGATTTAAACACAAAGGCAATCGATACAAGACTTAATGATTTGAAGATTGAAGGGATGCAGGAATTGGAAGCAGTGACGAGTGAGATGGTTCGGTTGATTGAAACAGCAACTGTGCCTATTTTGGCAGTGGATGTTGATGGGATGGTCAATGGTTGGAATATCAAAATTGCCGATTTGACAGGTCTTCCTGTTGGCGATGCTATTGGAAAACATTTACTCACACTTGTTGAGGATTCTTCAACTGATATAGTCAAGAAGATGCTTAATCTGGCACTGCAGGGCGAAGAAGAGAAGAATGTCCAATTCGAGATCAAAACGCACGGCTCTCAGATGGATTCTGGTCCTATTAGTTTGATAGTTAATGCGTGTGCAAGCAGGGATCTTCATGAAAATGTAGTTGGAGTTTGTTTTGTGGCTCAAGATATAACTGCTCAGAAGACTGTCATGGACAAATTCACCCGAATCGAAGGAGATTACAAGGCAATTGTACAGAACCCTAATCAATTAATACCTCCTATATTTGGTACAGATGAATTTGGCTGGTGCTGTGAGTGGAATGCAGCTATGATAAAGTTAACCGGATGGAAGCGAGAGGAGGTTATGGATAAAATGCTTCTAGGAGAGGTTTTTGGAACTCAGATGTCTTGTTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAATTTCGGTATTGTACTTAATAAAGCCATGACTGGTTTGGAAACAGAAAAGGTTCCTTTTGGTTTTTTCTCTCGGAAGGGAAAGTATGTAGAATGCCTACTTTCTGTGAGTAAGAAAATAGATGCGGAGGGAATAGTTACCGGTGTCTTCTGCTTCTTGCAGCTAGCTAGCCCGGAGCTGCAACAAGCGTTACATATTCAGCGCCTATCTGAACAAACAGCTCTCAAAAGACTGAAAGTATTAACTTATATGAAACGGCAGGTCAGGAATCCTTTGGCTGGGATTGTGTTCTCCAGTAAAATGTTGGAGAATACTGACTTGGGAACCGATCAAAAACGAATTGTCAACACCAGTTCTCAGTGCCAGCGCCAGCTTAGCAAAATTCTTGATGACTCCGATCTAGATAACATCATTGATGGGTACTTGGATCTTGAGATGGCTGAATTCACTTTGCATGAGGTACTTGTTACCTCTCTTAGTCAAGTTATGAATAGGAGTAACACAAGGGGTATCCGAATTGTGAATGATGTTGCAGAGCATATTGCGATAGAAACCTTATACGGTGATAGTCTTAGACTTCAGCAGGTCTTGGCCGACTTTTTACTAATTTCCATCAATTCCACACCAAATGGAGGCCAGGTTGTTATAGCAGCCTCCTTAACTAAAGAACAGTTGGGAAAATCTGTCCATCTTGTTAATTTGGAGCTCAGCATAACACATGGTGGTAATGGGGTGGCAGAAGCAGTGCTGAACCAGATGTTTGGAAATAACGGGCTCGAATCTGAGGAGGGTATTAGCCTACATATCAGTAGAAAGTTGTTAATGCTTATGAATGGAGATGTTCGTTATTTAAAAGAAGCAGGAAAATCGTCGTTTATTCTATCTGTTGAACTTGCAGCAGCTCATAAGCTGAAAAGTTAA 3375 0.4264 MSASRPSQSSNNSGRSRNSARIIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGDHQPRSNKVTTAYLNHIQRGKQIQPFGCLLALDEKTCKVIAYSENAPEMLTMMSHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVISEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADVVLPQKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELECQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKLWILGATPSEPQIREIALWMSEYHTDSTGLSTDSLSDAGFPGALKLSDTVCGMAAVRITSKDIVFWFRSPTSAEIRWGGAKHEPGEQDDGRKMHPRSSFKAFLEVVKARSIPWKDFEMDAIHSLQLILRNASKDTAIIDLNTKAIDTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGMVNGWNIKIADLTGLPVGDAIGKHLLTLVEDSSTDIVKKMLNLALQGEEEKNVQFEIKTHGSQMDSGPISLIVNACASRDLHENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAAMIKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVPFGFFSRKGKYVECLLSVSKKIDAEGIVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLTYMKRQVRNPLAGIVFSSKMLENTDLGTDQKRIVNTSSQCQRQLSKILDDSDLDNIIDGYLDLEMAEFTLHEVLVTSLSQVMNRSNTRGIRIVNDVAEHIAIETLYGDSLRLQQVLADFLLISINSTPNGGQVVIAASLTKEQLGKSVHLVNLELSITHGGNGVAEAVLNQMFGNNGLESEEGISLHISRKLLMLMNGDVRYLKEAGKSSFILSVELAAAHKLKS 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03914 1124 FunFam Phytochrome 613 744 - -
Trre10g03914 1124 MobiDBLite consensus disorder prediction 1 20 - -
Trre10g03914 1124 MobiDBLite consensus disorder prediction 43 63 - -
Trre10g03914 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Trre10g03914 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Trre10g03914 1124 CDD PAS 761 872 IPR000014 -
Trre10g03914 1124 PANTHER OS08G0260000 PROTEIN 67 955 - -
Trre10g03914 1124 SMART pas_2 619 685 IPR000014 -
Trre10g03914 1124 SMART pas_2 749 818 IPR000014 -
Trre10g03914 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Trre10g03914 1124 ProSiteProfiles Histidine kinase domain profile. 901 1120 IPR005467 -
Trre10g03914 1124 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Trre10g03914 1124 SUPERFAMILY GAF domain-like 198 398 - -
Trre10g03914 1124 Gene3D - 406 579 IPR043150 -
Trre10g03914 1124 Pfam PAS fold 69 185 IPR013654 GO:0006355
Trre10g03914 1124 SMART HKATPase_4 1006 1118 IPR003594 -
Trre10g03914 1124 SUPERFAMILY GAF domain-like 409 585 - -
Trre10g03914 1124 Gene3D PAS domain 610 748 - -
Trre10g03914 1124 Pfam GAF domain 218 401 IPR003018 GO:0005515
Trre10g03914 1124 SMART HisKA_10 894 955 IPR003661 GO:0000155|GO:0007165
Trre10g03914 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Trre10g03914 1124 NCBIfam PAS domain S-box protein 624 740 IPR000014 -
Trre10g03914 1124 Gene3D - 199 562 IPR029016 -
Trre10g03914 1124 Pfam PAS fold 750 872 IPR013767 GO:0006355
Trre10g03914 1124 Pfam PAS fold 620 734 IPR013767 GO:0006355
Trre10g03914 1124 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Trre10g03914 1124 Gene3D - 957 1121 IPR036890 -
Trre10g03914 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Trre10g03914 1124 SMART gaf_1 218 411 IPR003018 GO:0005515
Trre10g03914 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 955 1110 IPR036890 -
Trre10g03914 1124 FunFam Phytochrome 406 537 - -
Trre10g03914 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1116 IPR003594 -
Trre10g03914 1124 Pfam Phytochrome region 414 587 IPR013515 GO:0006355|GO:0009584
Trre10g03914 1124 CDD HisKA 907 949 IPR003661 GO:0000155|GO:0007165
Trre10g03914 1124 CDD PAS 628 734 IPR000014 -
Trre10g03914 1124 Gene3D PAS domain 73 321 - -
Trre10g03914 1124 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Trre10g03914 1124 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Trre10g03914 1124 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Trre10g03914 1124 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Trre10g03914 1124 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Trre10g03914 1124 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Trre10g03914 1124 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Trre10g03914 1124 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Trre10g03914 1124 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Trre10g03914 1124 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Trre10g03914 1124 Gene3D PAS domain 763 875 - -
Trre10g03914 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03914 Trre-Chr10 48445646 48449404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03914 1 1121 Histidine Kinase Gene Family AT1G09570 78.877 0.0 1862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03914 K12120 - gmx:100790763 1917.51