Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03909 ATGGCTTCTTCAATTACCGCTTCACTCGGAACAACAACTTCTTCCATAACCAAACCTTCCTCTCTCCTTAAAACCCCATCATCTTCCTTTTCACTTCATAACACTTTCCGTCTCAACACCCTTCTCCGTCTCCGACCTAACCACAAAAAAACTCCCACCGTTTCTTTCGTTATTTCTGCTATTGCCACCCCCAATACTACTCCCATCCTCACCCCTCAACAAGCTTTCAAGGGTTTTGGTTTCGATGACGCTACTAATGACCAAATTAGCCATGTTCCTGTTACCGTCAGCAAGGACGAACTCGACATTTCCAAACTCCGTTTTCCTTCCCAACTCGTTGACTCCCTCCAGAGGCGTGGAATTACTAGTCTTTTCCCCATTCAGAGAGCTGTGTTGCTGCCTGCAATAGAAGGTAGAGATATCATTGCTCGCGCAAAGACTGGGACTGGAAAGACATTAGCATTTGGAATTCCAATTATTAAGGGTCTCATTGAGAATGAACAAAGCAATACGAGGCGGTTTGGCCGGCTTCCTAAAGTATTAGTCCTTGCACCTACTAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATCTAAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAAAAGAATGCGCTTTCACGCGGTGTTGATGTTGTGGTTGGAACACCTGGGAGACTAATTGACCTGATAAATGGGAGAAGCCTACAACTTAGTGAAATTCAGTATTTGGTACTTGATGAAGCCGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAATCAATTTTAGAAACCATCCCGTCTCAGAGGCAGATAATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGAACAATCCAAAGACTATTGATTTGGTCGGTGACAGAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTGTACCAGCCACTTCAATGTCAAAGCGGAGAATTCTTTATGGTCTTATAAGTGCCTATGGAAAGGGTGGGAAGACTATTGTTTTCACACGGACAAAAAGGGATGCTGATGAAATATCATTTTCATTGACAAATAGTATAGCTTCTAAAGCATTGCATGGTGATATCTCTCAGTATCAGAGAGAGAGAACATTGGATGGTTTTCGGCAAGGGAGATTCACAGTGCTTGTTGCTACTGATGTTGCTTCTCGCGGACTAGATATTCCCAATGTTGATTTGATTATACATTATGAACTTCCCGATGGTCCCGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCGGGAAAAGAGGGTGCTGCTGTTGTAATGTACACCACTAGCCAGAAAAGAACTGTTATATCCCTTGAGCGTGACGTAGGCTCCAAATTTGAATTTATTAATCCACCGCCTATGCAAGATTTACCGGAATCACCCACCAGGCAACTTGTTTCTACACTTGATAGAGATAGAAATAATCAGAGAGGTTATAGGGATCAGAGAGGTTCTAGAACCGGTGGAGATGACTGGTCAACTGGAGGTAGACGGTCAGGTGGGGATGCTTCCTGGTCAAGTGGAGGTAGGCGGTCAGGTGGGGACGACTGGTCAACTGAAGGTAGACGATCAAACGGTTATTCGTCAAACAGATCTTCATCATCAAACGGGTATTCGGCAAACAGATCATCATCAAATGGTTATTCGTCAAACAGATCATCATCAAACGGTTATTCGTCATCAAACAGATCTTCACCATCAAACAGAGGTAGTTATGGAGGGGCCTGTTTTAATTGTGGACAATCAGGGCATCGGGCATCGGAATGTCCCTCTAAACGAGACTTGTTTTAG 1863 0.4375 MASSITASLGTTTSSITKPSSLLKTPSSSFSLHNTFRLNTLLRLRPNHKKTPTVSFVISAIATPNTTPILTPQQAFKGFGFDDATNDQISHVPVTVSKDELDISKLRFPSQLVDSLQRRGITSLFPIQRAVLLPAIEGRDIIARAKTGTGKTLAFGIPIIKGLIENEQSNTRRFGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQKNALSRGVDVVVGTPGRLIDLINGRSLQLSEIQYLVLDEADQMLAVGFEEDVESILETIPSQRQIMLFSATMPGWVKKLSRKHLNNPKTIDLVGDREEKLAEGIKLYAVPATSMSKRRILYGLISAYGKGGKTIVFTRTKRDADEISFSLTNSIASKALHGDISQYQRERTLDGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGAAVVMYTTSQKRTVISLERDVGSKFEFINPPPMQDLPESPTRQLVSTLDRDRNNQRGYRDQRGSRTGGDDWSTGGRRSGGDASWSSGGRRSGGDDWSTEGRRSNGYSSNRSSSSNGYSANRSSSNGYSSNRSSSNGYSSSNRSSPSNRGSYGGACFNCGQSGHRASECPSKRDLF 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03909 620 Pfam Helicase conserved C-terminal domain 334 442 IPR001650 -
Trre10g03909 620 Gene3D - 102 312 IPR027417 -
Trre10g03909 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 308 IPR014001 -
Trre10g03909 620 ProSiteProfiles Zinc finger CCHC-type profile. 600 615 IPR001878 GO:0003676|GO:0008270
Trre10g03909 620 MobiDBLite consensus disorder prediction 1 27 - -
Trre10g03909 620 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 100 475 - -
Trre10g03909 620 SUPERFAMILY Retrovirus zinc finger-like domains 583 618 IPR036875 GO:0003676|GO:0008270
Trre10g03909 620 Gene3D - 589 618 - -
Trre10g03909 620 SMART ultradead3 120 325 IPR014001 -
Trre10g03909 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 463 IPR027417 -
Trre10g03909 620 Pfam DEAD/DEAH box helicase 125 297 IPR011545 GO:0003676|GO:0005524
Trre10g03909 620 SMART c2hcfinal6 599 615 IPR001878 GO:0003676|GO:0008270
Trre10g03909 620 CDD DEADc 112 309 - -
Trre10g03909 620 MobiDBLite consensus disorder prediction 543 599 - -
Trre10g03909 620 FunFam ATP-dependent RNA helicase RhlE 94 311 - -
Trre10g03909 620 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 337 489 IPR001650 -
Trre10g03909 620 MobiDBLite consensus disorder prediction 492 620 - -
Trre10g03909 620 Pfam Zinc knuckle 599 615 IPR001878 GO:0003676|GO:0008270
Trre10g03909 620 MobiDBLite consensus disorder prediction 497 511 - -
Trre10g03909 620 CDD SF2_C_DEAD 322 451 - -
Trre10g03909 620 Gene3D - 328 505 IPR027417 -
Trre10g03909 620 SMART helicmild6 362 442 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03909 Trre-Chr10 48412563 48416601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03909 127 464 Eukaryotic Initiation Factors Gene Family AT1G72730 36.963 1.79e-61 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03909 - K16911 tpra:123902197 942.954