Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03904 ATGGAAAGGACAATTTTCATTTGTTTAGTAGTGTTTGTGGGGTTGTTCACCTCAGAACTAAAGGTGGCCTCAGCAATTTGGCAGCAAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACTATGGGGGGTCCGTGTGGATATGGAAATCTATACACAGATGGCTTGAATTGTTCCAATCCTTTACAGAAAAGTTGGGTGCAAAAAAAAGTCCAACTCAGTAATGGAAAGACTCGTACAGCTATTAATGTGGCACCCTCTAGTTGGAGATTTGGTCAGTCTTTCACCAGCAAGGTTCAATTCTGA 312 0.4263 MERTIFICLVVFVGLFTSELKVASAIWQQAHATFYGGSDASGTMGGPCGYGNLYTDGLNCSNPLQKSWVQKKVQLSNGKTRTAINVAPSSWRFGQSFTSKVQF 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03904 103 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Trre10g03904 103 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Trre10g03904 103 SUPERFAMILY PHL pollen allergen 64 99 IPR036749 -
Trre10g03904 103 Gene3D - 15 84 IPR036908 -
Trre10g03904 103 PANTHER EXPANSIN-A15 9 57 IPR002963 GO:0009664
Trre10g03904 103 SUPERFAMILY Barwin-like endoglucanases 26 55 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03904 Trre-Chr10 48371870 48373055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03904 5 57 Expansin Gene Family AT4G01630 67.273 1.81e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03904 - - gmx:100783801 97.8265