Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03889 ATGCTTGCCGCTGCTTCCAGGCACGCCAGACCAACCACTGGCAGCGGCAATCGTATCCGGTCACTTCTAACTTCTTCCGGCATCACCACCGGCTACTCAATTTCCACCACAAACGGTTACCGTTACAGCAGCCACGGTTACAGAATCAGTTACAGTAACCGTCACAACAGAACATGTCCAAGCTTACTTTTCTCTATCAAAGGCTTTCTCTCTGATTCTTCATCATCATCATCATCATCTGGCAGAAATTTGAAGGTAGATGGAAAAGCATTGTTTTCAACTTCAGCTAAAACTGATGATGATGGAAGTCAGAAGAACCAAAAAACTTCTACCACTGTTGCTAAATTGACTCCAGGTGGTGGACAAATTGCTGATATAAAGATCCTAAAATCGCTTGCTGGTTACCTTTGGATGAAAGATAATCTTGAATTTCAGTTTCGGGTTGTTGCTGCATTGTTTTTACTTGTTGGAGCTAAGGTTGTGAATGTTCAGGTCCCTTTCTTATTCAAGCTTGCAGTTGATTGGTTAAATACTGCCACGGGCAATGCTGCTGCTGTTGCTTCAAATCCTACTGCGATGGCTCTTTTTGCTACCCCGGTGGCAGTGTTGATTGGATACGGGATTGCACGTTCTGGAGCTTCTGCTTTCAATGAACTGCGGACTGCTTTGTTTTCCAAGGTAGCACTGCGAACAATTCGTTTAGTTTCAAGGAAGGTCTTTTCACATTTGCACGACCTTGACCTTCAATATCATCTAAGTCGAGAAACTGGTGGATTAAGTCGAATAATTGATCGTGGTAGCCGTGCAATAAATTTCATTCTCTCCGCTATGGTGTTCAATGTAGTACCCACTGTATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCACCTTTTGCATGGATTACTTCCCTGTCAGTTGCTGCTTATGTTGTTTTCACACTTTCTATCACACAGTGGAGGACTAAATTCAGGAAAGCCATGAATAAGGCTGATAATGACGCTAGTACTAGGCAAATTGATTCACTTATTAATTATGAGACCGTCAAATATTTCAATAATGAAGGTTATGAAACCGATCATTATGACAAGTACCTAAAGAGGTATGAGGATGCTGCTCTGAAAACCCAACATAGTCTTGCTTTGTTGAACTTTGGTCAAAATGCTATATTTAGTGCTGCGCTTTCTACAGCAATGGTTCTATGTTCTCATGGAATAATGGGTGGCACAATGACCGTTGGTGATTTGGTGATGGTAAATGGGCTCCTCTTCCAACTATCCCTTCCACTCAATTTCCTTGGCAGTGTTTATCGTGAAACTATACAAAGTCTAATTGACATGAAATCCATGTTCCAATTACTTGAGGAAAAAGCAGACATTAGGGATAAAGAAAATGCAAAGCCTCTAAGATTTAATGGGGGGAGTATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGACGGAATATCACTACTTGTACCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTCAGAATGCTATTCAGATTTTTTGATCCCCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGACGTAACCCTTGAGAGTTTACGGAAGTCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACGATATTTCATAACATTCACTATGGTCGGCTTTCATCAACAGAAGAGGAGGTCTATGAAGCTGCCCGGAAAGCAGCAATCCATGACACTATCATGAGTTTTCCAGAGAAATACTCCACTGTTGTGGGAGAGCGAGGGCTAAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTTGCTCGGGCATTCTTAAAAGCACCTGCAATATTATTGTGTGATGAAGCTACAAGTGCTCTAGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCACTATCAACTAATCGAACTTCCATATTCATTGCTCACAGGCTCACCACTGCAATGCAGTGTGATGAGATTATTGTTTTGGAAAATGGAAAGGTGGTTGAGCATGGACCACATGAAGTTCTCTTAGCAAATGCAGGAAGATATGCCCAGCTTTGGGGACAGCAAAATAACACTATTGATGCAATTGACACAGCCATCAAATTGGGAGCATAA 2193 0.4122 MLAAASRHARPTTGSGNRIRSLLTSSGITTGYSISTTNGYRYSSHGYRISYSNRHNRTCPSLLFSIKGFLSDSSSSSSSSGRNLKVDGKALFSTSAKTDDDGSQKNQKTSTTVAKLTPGGGQIADIKILKSLAGYLWMKDNLEFQFRVVAALFLLVGAKVVNVQVPFLFKLAVDWLNTATGNAAAVASNPTAMALFATPVAVLIGYGIARSGASAFNELRTALFSKVALRTIRLVSRKVFSHLHDLDLQYHLSRETGGLSRIIDRGSRAINFILSAMVFNVVPTVLEISMVSGILAYKFGAPFAWITSLSVAAYVVFTLSITQWRTKFRKAMNKADNDASTRQIDSLINYETVKYFNNEGYETDHYDKYLKRYEDAALKTQHSLALLNFGQNAIFSAALSTAMVLCSHGIMGGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLIDMKSMFQLLEEKADIRDKENAKPLRFNGGSIQFENVHFSYLTERKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKIDDQDIRDVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSSTEEEVYEAARKAAIHDTIMSFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLSTNRTSIFIAHRLTTAMQCDEIIVLENGKVVEHGPHEVLLANAGRYAQLWGQQNNTIDAIDTAIKLGA 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03889 730 FunFam ABC transporter B family member 25 472 726 - -
Trre10g03889 730 MobiDBLite consensus disorder prediction 96 114 - -
Trre10g03889 730 Gene3D - 471 725 IPR027417 -
Trre10g03889 730 SUPERFAMILY ABC transporter transmembrane region 144 463 IPR036640 GO:0005524|GO:0016020
Trre10g03889 730 CDD ABCC_ATM1_transporter 480 715 - -
Trre10g03889 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 715 IPR027417 -
Trre10g03889 730 CDD ABC_6TM_ATM1_ABCB7 151 454 - -
Trre10g03889 730 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 480 714 IPR003439 GO:0005524
Trre10g03889 730 FunFam ATP-binding cassette sub-family B member 7 121 468 - -
Trre10g03889 730 Pfam ABC transporter transmembrane region 149 433 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre10g03889 730 ProSitePatterns ABC transporters family signature. 617 631 IPR017871 GO:0005524|GO:0016887
Trre10g03889 730 MobiDBLite consensus disorder prediction 1 21 - -
Trre10g03889 730 Gene3D ABC transporter type 1, transmembrane domain 135 470 IPR036640 GO:0005524|GO:0016020
Trre10g03889 730 SMART AAA_5 505 691 IPR003593 GO:0016887
Trre10g03889 730 Pfam ABC transporter 496 645 IPR003439 GO:0005524
Trre10g03889 730 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 82 711 IPR039421 -
Trre10g03889 730 MobiDBLite consensus disorder prediction 95 114 - -
Trre10g03889 730 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 149 446 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03889 Trre-Chr10 48219106 48230415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03889 316 716 Calmodulin-binding Proteins AT2G36910 35.437 1.76e-63 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03889 K05662 - gmx:100779975 1140.18