Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03888 ATGCTTGCTGTTGCTTCGAGGCACGTCAGACTCACCACTGTGCGGTCACTTTCAAACGGTTACCGTTACAGTTACAGAATCAGTTACAATAACCGCAACACCAAAATATGCCCAACTTTACTTTTCTCTATAAAAAAAGATTTTCTCTCCGATTTATCAACATTCCATACAAGAAATTCAAAGGTAGATGGAAAAGCTTTGTTTTCAACTTCAGCTAAAACTGATGATGATGGAAGTCAGAAGAACCAAAAAAATTCTACTACTGTTGATAAATCGTCTCCAGGTGATGGACAAGTTGCTGATATAAAGATCCTAAAATCACTTATTAGTTACCTTTGGATGAAAGATAATCTTGAATTTCAGTTTCGGGTTGTTGCTGCAATGTTTTTACTTGTTGGAGCTAAGGTTGTAAATGTTCAGGTCCCTTTCTTATTCAAGCTTGCAGTTGATTGGTTAAATACTGCCACAGGCAATGCTGCTGCTGTTGCTTCAAATCCTACTGCGGTCGCCCTTTTTGCTACCCCCGTGGCCGTGTTGATTGGATACGGGATTGCGCGTTCTGGAGCTTCTGCTTTCAGTGAACTACGGAGTGCTCTTTTTTCCAAGGTAGCACTGCGAACAATTCGTTTAGTTTCAAGAAGGGTCTTTTCACATTTGCACGACCTTGACCTTCGATATCATTTAAGTCGAGAAACTGGTGCATTAAATCGAATAATTGACCGTGGTAGCCGTGCAATAAATTTCATTCTCTCCTCTACGGTGTTCAATGTAGTACCCACCATATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCACCTTTTGCATGGATTACTTTCCTGTCAGTTGCTGCTTATGTTGTTTTCACACTTTCTATCACACAGTGGAGGAGTAAATTCAGGAAAGCCATGAATAAGGCTGATAATGATGCTAGTAGTAGGCAAATTGATTCACTTATTAATTATGAGACCGTCAAATATTTCAATAACGAAGCTCATGAAGTGGATCATTGTGACAAGTACCTAAAGAGGTATGAGGATGCTGCTCTGAAAACCCAACACAGTCTTGCTTTGTTGAACTTTGGTCAAAATCTTATATTTAGTATCGCTCTTTCAACAGCAATGGTTCTGTGTTCTCATGGGATTATGGATGGCAGAATGACTGTTGGTGATTTGGTGATGGTAAATGGGCTTCTCTTCCAACTATCTCTCCCGCTCAATTTCCTTGGTGGTGTTTATCGTGAAACTATACAAGGTCTAATTGACATGAAATCAATGTTCCAATTACTTGAGGAAAAAGCAGACATTAAGGACAAAGAAAATGCAAAGCCTCTAAGATTTAATGGTGGGAGGATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCACTACTTGTGCCGGCTGGTAAAAGTGTTGCCATTGTTGGGACTAGTGGAAGTGGTAAATCAACCATACTCCGAATGCTATTCAGATTTTTTGATCCCCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGAGGTAACGCTTGAGAGTTTACGGAAGTCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACAATTTTTCATAACATTCACTATGGTCGGCTTTCATCAACAGAAGAGGAGGTCTATGAAGCTGCCCGGAAAGCAGCAATCCATGACACTATCATGAGTTTTCCTGATAAATACTCCACTGTTGTGGGAGAGCGAGGGCTAAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTTGCTCGGGCTTTCTTAAAAGCACCTGCTATTCTGTTGTGTGATGAAGCTACAAGTGCTCTAGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCACTATCAACTAATCGAACTTCCATATTCATTGCTCACAGGCTCACCACTGCAATGCAGTGTGATGAGATCGTTGTTTTGGAAAATGGAAAGGTGGTTGAGCATGGACCACATGAAGTGCTCTTAGCAAATGCCGGAAGATATGCACAGCTTTGGGGACAACAAAATAACACTATTGATGCAATTGACACAGCCGTCAAATTGGGAGCATAA 2121 0.4026 MLAVASRHVRLTTVRSLSNGYRYSYRISYNNRNTKICPTLLFSIKKDFLSDLSTFHTRNSKVDGKALFSTSAKTDDDGSQKNQKNSTTVDKSSPGDGQVADIKILKSLISYLWMKDNLEFQFRVVAAMFLLVGAKVVNVQVPFLFKLAVDWLNTATGNAAAVASNPTAVALFATPVAVLIGYGIARSGASAFSELRSALFSKVALRTIRLVSRRVFSHLHDLDLRYHLSRETGALNRIIDRGSRAINFILSSTVFNVVPTILEISMVSGILAYKFGAPFAWITFLSVAAYVVFTLSITQWRSKFRKAMNKADNDASSRQIDSLINYETVKYFNNEAHEVDHCDKYLKRYEDAALKTQHSLALLNFGQNLIFSIALSTAMVLCSHGIMDGRMTVGDLVMVNGLLFQLSLPLNFLGGVYRETIQGLIDMKSMFQLLEEKADIKDKENAKPLRFNGGRIQFENVHFSYLTERKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKIDDQDIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSSTEEEVYEAARKAAIHDTIMSFPDKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLSTNRTSIFIAHRLTTAMQCDEIVVLENGKVVEHGPHEVLLANAGRYAQLWGQQNNTIDAIDTAVKLGA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03888 706 Pfam ABC transporter transmembrane region 125 409 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre10g03888 706 CDD ABCC_ATM1_transporter 456 691 - -
Trre10g03888 706 Gene3D - 448 702 IPR027417 -
Trre10g03888 706 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 456 690 IPR003439 GO:0005524
Trre10g03888 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 691 IPR027417 -
Trre10g03888 706 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 87 687 IPR039421 -
Trre10g03888 706 CDD ABC_6TM_ATM1_ABCB7 127 430 - -
Trre10g03888 706 FunFam ABC transporter B family member 25 448 702 - -
Trre10g03888 706 SMART AAA_5 481 667 IPR003593 GO:0016887
Trre10g03888 706 ProSitePatterns ABC transporters family signature. 593 607 IPR017871 GO:0005524|GO:0016887
Trre10g03888 706 FunFam ATP-binding cassette sub-family B member 7 96 444 - -
Trre10g03888 706 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 125 422 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre10g03888 706 Gene3D ABC transporter type 1, transmembrane domain 111 446 IPR036640 GO:0005524|GO:0016020
Trre10g03888 706 Pfam ABC transporter 472 621 IPR003439 GO:0005524
Trre10g03888 706 MobiDBLite consensus disorder prediction 71 94 - -
Trre10g03888 706 SUPERFAMILY ABC transporter transmembrane region 119 439 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03888 Trre-Chr10 48206546 48216605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03888 371 692 Calmodulin-binding Proteins AT2G36910 40.122 1.47e-63 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03888 K05662 - gmx:100779975 1092.8