Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03887 ATGGAGTGGACATGGGAGGAAAACCTCCTCTTAAAATATCTGGATGAGGAGATGATCGAGGGCCAATTGGACAAATTGGCTGCTCTTGTTCCAGAAAGATCAACAAACGAAGCAAAAGAGTATAATCAGATGATTGATGAAGATCAGTTCGAGGTGCCAACGTACTCGTCAAAAGACAACGTTCCGATCGATGAAAACAAAGCTCCTCTACTTAAGAATAAGATCAACAAAGTGTTTCATTGGAAAGAAGAAGAACACAGGTTATTTCTAGAGGGACTCGAGAAGTATGGCAAGGGAAGATGGAAAGTGATTTCAAAACATATTGGTACAAAAACTTCAACTCAAGTTGCCAGCCATGCTCAAAAGCATTTCATTCGAATTAATCAACAAAGTGTTGATTCAACAAAAAAAAGTAAAAGAAGAAGCAAATTTGACACTACCTTGTGGAATGGAGATTTCCACCCTCTTCTCTACCGGGACTACATTCCACCTCTTCCAAATTTTGAAACACAACCAATTGTGGTGTAG 528 0.392 MEWTWEENLLLKYLDEEMIEGQLDKLAALVPERSTNEAKEYNQMIDEDQFEVPTYSSKDNVPIDENKAPLLKNKINKVFHWKEEEHRLFLEGLEKYGKGRWKVISKHIGTKTSTQVASHAQKHFIRINQQSVDSTKKSKRRSKFDTTLWNGDFHPLLYRDYIPPLPNFETQPIVV 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03887 175 CDD SANT 81 124 IPR001005 -
Trre10g03887 175 Gene3D - 79 130 - -
Trre10g03887 175 Pfam Myb-like DNA-binding domain 81 123 IPR001005 -
Trre10g03887 175 SMART sant 77 126 IPR001005 -
Trre10g03887 175 SUPERFAMILY Homeodomain-like 77 128 IPR009057 -
Trre10g03887 175 ProSiteProfiles Myb-like domain profile. 81 124 IPR001005 -
Trre10g03887 175 PANTHER TRANSCRIPTION FACTOR KUA1 22 147 - -
Trre10g03887 175 ProSiteProfiles SANT domain profile. 81 128 IPR017884 -
Trre10g03887 175 NCBIfam myb-like DNA-binding domain, SHAQKYF class 77 126 IPR006447 GO:0003677
Trre10g03887 175 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 128 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03887 Trre-Chr10 48185805 48186644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03887 81 126 EF-hand Containing Proteins AT3G07740 34.783 7.96e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre10g03887 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03887 - - tpra:123922541 216.853