Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03886 ATGTATCAAAACACAAATAATAATGAAAAATCAATGGAGTGGACATGGGAGGAAAACCTCCTCTTAAAATATCTGGATGAGGAGATGATCGAGGGCCAATTGGACAAATTGGCTGCTCTTGTTCCAGAAAGATCAACAAACGAAGCAAAAGAGTATAATCAGATGATTGATGAAGATCAGTTCGAGGTGCCAACGTACTCGTCAAAAGACAACGTTCCGATCGATGAAAACAAAGCTCCTCTACTTAAGAATAAGATCAACAAAGTGTTTCATTGGAAAGAAGAAGAACACAGGTTATTTCTAGAGGGACTCGAGAAGTATGGCAAGGGAAGATGGAAAGTGATTTCAAAACATATTGGTACAAAAACTTCAACTCAAGTTGCCAGCCATGCTCAAAAGCATTTCATTCGAATTAATCAACAAAGTGTTGATTCAACAAAAAAAAGTAAAAGAAGAAGCAAATTTGACACTACCTTGTGGAATGGAGATTTCCACCCTCTTCTCTACCGGGACTACATTCCACCTCTTCCAAATTTTGAAACACAACCAATTGTGGTGTAG 561 0.3797 MYQNTNNNEKSMEWTWEENLLLKYLDEEMIEGQLDKLAALVPERSTNEAKEYNQMIDEDQFEVPTYSSKDNVPIDENKAPLLKNKINKVFHWKEEEHRLFLEGLEKYGKGRWKVISKHIGTKTSTQVASHAQKHFIRINQQSVDSTKKSKRRSKFDTTLWNGDFHPLLYRDYIPPLPNFETQPIVV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03886 186 SUPERFAMILY Homeodomain-like 88 139 IPR009057 -
Trre10g03886 186 CDD SANT 92 135 IPR001005 -
Trre10g03886 186 Gene3D - 90 141 - -
Trre10g03886 186 PANTHER TRANSCRIPTION FACTOR KUA1 11 158 - -
Trre10g03886 186 NCBIfam myb-like DNA-binding domain, SHAQKYF class 88 137 IPR006447 GO:0003677
Trre10g03886 186 ProSiteProfiles SANT domain profile. 92 139 IPR017884 -
Trre10g03886 186 SMART sant 88 137 IPR001005 -
Trre10g03886 186 SMART sant 10 59 IPR001005 -
Trre10g03886 186 Pfam Myb-like DNA-binding domain 92 134 IPR001005 -
Trre10g03886 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 139 IPR017930 -
Trre10g03886 186 ProSiteProfiles Myb-like domain profile. 92 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03886 Trre-Chr10 48185772 48186644 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre10g03886 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03886 - - tpra:123922541 216.853