Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03885 ATGAACAACATCAATAATAATGGCAACTCAAAGGAGTGGATATGGAATGGAGATAAAGGCTTAGAATATCCGGAGGCTGTTCTTGTTCCTGGTTGGTCCGAAGTAAAAGACAGGGCTTTGAATGATGAAAACAAAGATCGTCCACTTGAGAATAAGATTAGAAAAGTGTTTCATTGGAAAGAGGAAGAACACAGGTTATTTCTAGAGGGGCTCGAGATGTATGGCAGGGGAAATTGGAAAGCAATTTCAAAACATGTTGGTTCAAAAACTTCAACTCAAGTTGCTAGCCATGCTCAAAAGCGTTTCATTCGAGTTGATCAACAAAGTGGCTATTCAACAAAAAAAAGTAAAAGAAGAAGCAAGTTTGACACCACCTCATGGAATGGGGATTTCCACCCTCTTCTCTATAGGGACTACATTCCACCTTCTCCACCAAATGTTGAAACACAACCATCTATAGAGCAGTTACTCGAACAATTTTATTATTAA 489 0.3865 MNNINNNGNSKEWIWNGDKGLEYPEAVLVPGWSEVKDRALNDENKDRPLENKIRKVFHWKEEEHRLFLEGLEMYGRGNWKAISKHVGSKTSTQVASHAQKRFIRVDQQSGYSTKKSKRRSKFDTTSWNGDFHPLLYRDYIPPSPPNVETQPSIEQLLEQFYY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03885 162 ProSiteProfiles Myb-like domain profile. 59 102 IPR001005 -
Trre10g03885 162 PANTHER TRANSCRIPTION FACTOR KUA1 46 128 - -
Trre10g03885 162 SUPERFAMILY Homeodomain-like 54 106 IPR009057 -
Trre10g03885 162 Gene3D - 57 107 - -
Trre10g03885 162 ProSiteProfiles SANT domain profile. 59 106 IPR017884 -
Trre10g03885 162 Pfam Myb-like DNA-binding domain 59 100 IPR001005 -
Trre10g03885 162 CDD SANT 59 100 IPR001005 -
Trre10g03885 162 SMART sant 55 104 IPR001005 -
Trre10g03885 162 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 106 IPR017930 -
Trre10g03885 162 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 104 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03885 Trre-Chr10 48175684 48178684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03885 59 97 EF-hand Containing Proteins AT3G07740 48.718 1.21e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre10g03885 Myb_DNA-binding 4.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03885 - - tpra:123922541 195.667