LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g03883	ATGGCTTCGGAGAAAGAAGCCGTTCTTGCAACTACCGTCTCTGAATCTGATCCTCCCACTATGTTTGACAGGAGTATTATCAAAATGGAAAATCCTTCTACTGTATTTTATGAGGATGATGAGGTCCTTGCTTTTAAGGATATAGCTCCTGAAGCTCCTCCCCATATTATAATCATTCCCAAAGCTAGAGACGGGTTGAATGCTCTACCTAAGGCTCAAGCACCGCTGATTTCAAGCCAAGTCGGGTGGAATAATATTACGCTCGGTGAAGAACAAGAATCAACTCAAAAAAGCCAAAGAACCAAGTTTACTCCGGGAGAAGATAAAGTTCTCATCCAAGCATGGCTAAATGTTCCCAAGAATGTAGCACCGGAGGCAAACCAAAGAGTCGATTCCTTTTGGTTAAGAATTAAAAATAATTACAATGAATATCGTGGCCATTTCAAACCGAGGGGAGAGTCACAACTAAAAGCACGTTGGCATAGGGTGAATAGCATAGTTCATAACTTTGTAGCATGCTACAAAGCAGCCAATGAGAAAAAGGAAAGTGGTAGCTCTGAGTCTGACATCATAGGAGATGCATATACGCTTTTTTATCAATACGAAGGTGAACCGTTCAAGTTAGAGCATGCATGGCGATTGTTGAAAGATGACCCTAAATGGTCAAATGCATCATTTGAAGGAGCTAGTAAAAGAACCAAGATTTCTGCTTCTGGAGCATACTCGACCACTTCTAATCTGGACACGCCATCAAGGTGTGAATACAACGCAGCTTCACCTACTGTGGTTTGTCCAACGGGGATAGAAGTAGAGAAAAGAAAGGAAAAATCAAAATCGGAGGAAACATCATCTGTGGTTTGTCCAATGGGGACAGAAGTAGAGAAAAGAAAGGGAAAATCAAAATCGGAGGAAACATCTTCTGCTAATGTTGAGCAAATTGAAGTGCAAGAGATTCCAAAGACAAAAGTTCTTGTCATGGCAGAAATGGCGCGTGTCCAGGATGAACAAAATAAGTTGAAGGAGAAAGAGTTGAATATGAAGGAGAGAGAGTTTGAGTTGGAATTCCTCTTTAAGGATACATCTGGGATGACGGCCAGACAACAACGAGATCATGAGATGCTGTGCAATGTGATTAGAGAAAAATACGGAATTATGTAA	1158	0.4111	MASEKEAVLATTVSESDPPTMFDRSIIKMENPSTVFYEDDEVLAFKDIAPEAPPHIIIIPKARDGLNALPKAQAPLISSQVGWNNITLGEEQESTQKSQRTKFTPGEDKVLIQAWLNVPKNVAPEANQRVDSFWLRIKNNYNEYRGHFKPRGESQLKARWHRVNSIVHNFVACYKAANEKKESGSSESDIIGDAYTLFYQYEGEPFKLEHAWRLLKDDPKWSNASFEGASKRTKISASGAYSTTSNLDTPSRCEYNAASPTVVCPTGIEVEKRKEKSKSEETSSVVCPMGTEVEKRKGKSKSEETSSANVEQIEVQEIPKTKVLVMAEMARVQDEQNKLKEKELNMKEREFELEFLFKDTSGMTARQQRDHEMLCNVIREKYGIM	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g03883	385	Pfam	HIT domain	29	62	IPR011146	GO:0003824
	Trre10g03883	385	Gene3D	-	1	146	IPR036265	-
	Trre10g03883	385	PANTHER	-	87	380	-	-
	Trre10g03883	385	Coils	Coil	325	352	-	-
	Trre10g03883	385	PRINTS	Histidine triad family signature	22	38	IPR001310	-
	Trre10g03883	385	PRINTS	Histidine triad family signature	43	61	IPR001310	-
	Trre10g03883	385	MobiDBLite	consensus disorder prediction	291	310	-	-
	Trre10g03883	385	Pfam	No apical meristem-associated C-terminal domain	205	368	IPR029466	-
	Trre10g03883	385	SUPERFAMILY	HIT-like	24	67	IPR036265	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g03883	Trre-Chr10	48153273	48158216	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g03883	92	282	Glutathione S-transferase Gene Family	AT5G41240	33.663	2.21e-27	112

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g03883	-		-	tpra:123893220	605.134