Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre10g03879 | ATGTATAATAATGTGTGTTCTTCCAAAGGGCTTATCAACGAAAGCACAGATAATAACTCAAACTCAAAGGAGTGGTGGACATGGGATGATGATAAAAGCTTTGAGGAGAACATTTTAGAGATACTTGAAGGTCAATTTCTTGTTCCCGGACAACCAACGTCCGAAGTAAAGGAGCATACTCAGATGATTGACAATGGTGGTAACTTCGAGTTGCAAACCTACTACGATTGTATTTCAAAAGATAATGGTTCGACCGATGTGAACAAACATCCTCCGCTGAAGAATAAAATCAAGAAAGTGCAACATTGGAAAAAAGAAGAACACGGATTTCTAGATGGGCTCGAGAAGTATGGTAGGGGAAATTGGAAAGCGATTTCAAAACATGTTGGTACAAAAACTTGTACTCAAGTTGCTAGCCATGCTCAAAAGTATTTCATTCGAGTTGATCAACAAAATGGTTATTCAGCAAAAAAGAGTAAAAGAAGAAGCAAGTTTGACACCACTTCATGGAATGGAGATTTCCACCCTCTTCTCTATAGGGACTGCATTACACCTTCTACACCAAATGTTGAAACACACCCAACTGTAGAGCAGATGCATGAGGTAGAAGAATAA | 615 | 0.387 | MYNNVCSSKGLINESTDNNSNSKEWWTWDDDKSFEENILEILEGQFLVPGQPTSEVKEHTQMIDNGGNFELQTYYDCISKDNGSTDVNKHPPLKNKIKKVQHWKKEEHGFLDGLEKYGRGNWKAISKHVGTKTCTQVASHAQKYFIRVDQQNGYSAKKSKRRSKFDTTSWNGDFHPLLYRDCITPSTPNVETHPTVEQMHEVEE | 204 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre10g03879 | 204 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Trre10g03879 | 204 | SUPERFAMILY | Homeodomain-like | 98 | 149 | IPR009057 | - | |
Trre10g03879 | 204 | Pfam | Myb-like DNA-binding domain | 105 | 145 | IPR001005 | - | |
Trre10g03879 | 204 | PANTHER | TRANSCRIPTION FACTOR KUA1 | 22 | 172 | - | - | |
Trre10g03879 | 204 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 98 | 147 | IPR006447 | GO:0003677 | |
Trre10g03879 | 204 | CDD | SANT | 103 | 145 | IPR001005 | - | |
Trre10g03879 | 204 | Gene3D | - | 101 | 150 | - | - | |
Trre10g03879 | 204 | ProSiteProfiles | SANT domain profile. | 104 | 149 | IPR017884 | - | |
Trre10g03879 | 204 | SMART | sant | 99 | 147 | IPR001005 | - | |
Trre10g03879 | 204 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 95 | 149 | IPR017930 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre10g03879 | Trre-Chr10 | 48119934 | 48120901 | Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Trre10g03879 | Myb_DNA-binding | 6.8e-10 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre10g03879 | - | - | tpra:123922541 | 261.151 |