Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03879 ATGTATAATAATGTGTGTTCTTCCAAAGGGCTTATCAACGAAAGCACAGATAATAACTCAAACTCAAAGGAGTGGTGGACATGGGATGATGATAAAAGCTTTGAGGAGAACATTTTAGAGATACTTGAAGGTCAATTTCTTGTTCCCGGACAACCAACGTCCGAAGTAAAGGAGCATACTCAGATGATTGACAATGGTGGTAACTTCGAGTTGCAAACCTACTACGATTGTATTTCAAAAGATAATGGTTCGACCGATGTGAACAAACATCCTCCGCTGAAGAATAAAATCAAGAAAGTGCAACATTGGAAAAAAGAAGAACACGGATTTCTAGATGGGCTCGAGAAGTATGGTAGGGGAAATTGGAAAGCGATTTCAAAACATGTTGGTACAAAAACTTGTACTCAAGTTGCTAGCCATGCTCAAAAGTATTTCATTCGAGTTGATCAACAAAATGGTTATTCAGCAAAAAAGAGTAAAAGAAGAAGCAAGTTTGACACCACTTCATGGAATGGAGATTTCCACCCTCTTCTCTATAGGGACTGCATTACACCTTCTACACCAAATGTTGAAACACACCCAACTGTAGAGCAGATGCATGAGGTAGAAGAATAA 615 0.387 MYNNVCSSKGLINESTDNNSNSKEWWTWDDDKSFEENILEILEGQFLVPGQPTSEVKEHTQMIDNGGNFELQTYYDCISKDNGSTDVNKHPPLKNKIKKVQHWKKEEHGFLDGLEKYGRGNWKAISKHVGTKTCTQVASHAQKYFIRVDQQNGYSAKKSKRRSKFDTTSWNGDFHPLLYRDCITPSTPNVETHPTVEQMHEVEE 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03879 204 MobiDBLite consensus disorder prediction 1 21 - -
Trre10g03879 204 SUPERFAMILY Homeodomain-like 98 149 IPR009057 -
Trre10g03879 204 Pfam Myb-like DNA-binding domain 105 145 IPR001005 -
Trre10g03879 204 PANTHER TRANSCRIPTION FACTOR KUA1 22 172 - -
Trre10g03879 204 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 147 IPR006447 GO:0003677
Trre10g03879 204 CDD SANT 103 145 IPR001005 -
Trre10g03879 204 Gene3D - 101 150 - -
Trre10g03879 204 ProSiteProfiles SANT domain profile. 104 149 IPR017884 -
Trre10g03879 204 SMART sant 99 147 IPR001005 -
Trre10g03879 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03879 Trre-Chr10 48119934 48120901 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre10g03879 Myb_DNA-binding 6.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03879 - - tpra:123922541 261.151