Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03878 ATGATGTATAATAATGTGTGTTCTTCCAAAGGGCTTATCAACGAAAGCACAGATAATAACTCAAACTCAAAGGAGTGGTGGACATGGGATGATGATAAAAGCTTTGAGGAGAACATTTTAGAGATACTTGAAGGTCAATTTCTTGTTCCCGGACAACCAACGTCCGAAGTAAAGGAGCATACTCAGATGATTGACAATGGTGGTAACTTCGAGTTGCAAACCTACTACGATTGTATTTCAAAAGATAATGGTTCGACCGATGTGAACAAACATCCTCCGCTGAAGAATAAAATCAAGAAAGTGCAACATTGGAAAAAAGAAGAACACGGATTTCTAGATGGGCTCGAGAAGTATGGTAGGGGAAATTGGAAAGCGATTTCAAAACATGTTGGTACAAAAACTTGTACTCAAGTTGCTAGCCATGCTCAAAAGTATTTCATTCGAGTTGATCAACAAAATGGTTATTCAGCAAAAAAGAGTAAAAGAAGAAGCAAGTTTGACACCACTTCATGGAATGGAGATTTCCACCCTCTTCTCTATAGGGACTGCATTACACCTTCTACACCAAATGTTGAAACACACCCAACTGTAGAGCAGATGCATGAGGTAGAAGAATAA 618 0.3867 MMYNNVCSSKGLINESTDNNSNSKEWWTWDDDKSFEENILEILEGQFLVPGQPTSEVKEHTQMIDNGGNFELQTYYDCISKDNGSTDVNKHPPLKNKIKKVQHWKKEEHGFLDGLEKYGRGNWKAISKHVGTKTCTQVASHAQKYFIRVDQQNGYSAKKSKRRSKFDTTSWNGDFHPLLYRDCITPSTPNVETHPTVEQMHEVEE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03878 205 SUPERFAMILY Homeodomain-like 99 150 IPR009057 -
Trre10g03878 205 CDD SANT 104 146 IPR001005 -
Trre10g03878 205 Gene3D - 102 151 - -
Trre10g03878 205 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 148 IPR006447 GO:0003677
Trre10g03878 205 ProSiteProfiles SANT domain profile. 105 150 IPR017884 -
Trre10g03878 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 150 IPR017930 -
Trre10g03878 205 SMART sant 100 148 IPR001005 -
Trre10g03878 205 MobiDBLite consensus disorder prediction 1 23 - -
Trre10g03878 205 PANTHER TRANSCRIPTION FACTOR KUA1 22 173 - -
Trre10g03878 205 Pfam Myb-like DNA-binding domain 106 146 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03878 Trre-Chr10 48119931 48120901 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre10g03878 Myb_DNA-binding 6.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03878 - - tpra:123922541 261.151