Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03877 ATGAACAACATCAACAACAATGGCAGCTCAAACGAGTGGACATGGGACGAAGATAAAGGCTTTGAGGATAACCTCCTCTTAGAATATCCAAAGAACAATCTGACTGTTCTTTTTCCTGGTTGGTCAATTGCCGAAGTAGAAAAACATACTCAGATGATCAAGGAAGACCGCTTTGAGTTGCCGACATTCCTAGATAATTGTATTTCAAAAGACCGTGCTTCAAATGATGAAAACAAAGATCCTCCACTTAAGAATAAGATCAGGAAAGTGTTTCATTGGAAAGAAGAAGAACACAGGTTATTTCTAGAGGGGCTCGAGATGTATGGCAGGGGAAATTGGAAAGTGATTTCAAAACATGTTGGTACACAACCATATTCTCAAGTTTTATAA 390 0.3846 MNNINNNGSSNEWTWDEDKGFEDNLLLEYPKNNLTVLFPGWSIAEVEKHTQMIKEDRFELPTFLDNCISKDRASNDENKDPPLKNKIRKVFHWKEEEHRLFLEGLEMYGRGNWKVISKHVGTQPYSQVL 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03877 129 CDD SANT 93 128 IPR001005 -
Trre10g03877 129 Gene3D - 91 129 - -
Trre10g03877 129 PANTHER TRANSCRIPTION FACTOR KUA1 9 122 - -
Trre10g03877 129 SUPERFAMILY Homeodomain-like 92 128 IPR009057 -
Trre10g03877 129 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 129 IPR017930 -
Trre10g03877 129 ProSiteProfiles SANT domain profile. 93 129 IPR017884 -
Trre10g03877 129 Pfam Myb-like DNA-binding domain 93 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03877 Trre-Chr10 48114072 48114845 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre10g03877 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03877 - - tpra:123922541 137.887