Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03872 ATGAAGTATTTTTCAAGGGGTTGTAAGTGTGAAGTTTTTTTCTGCTTTCTGTTCTGCTGCTTTCTATTGGCTTCTAGTCAGAGAACTGACCCTTCTGAAGCTGTTACATTGAGAAGAATAAGGGACAATTTGATTGATATCAATGGAAATTTGAGCAGCTGGAGTCGCGGAGACCCGTGTAGCTCCAAGTGGACAGGGGTTATGTGCTCGATAGTTGATGGCTATCTACATGTTCAACGATTGCATCTAATGAATATGAGCTTGGCTGGATTTTTGGCACCTGAGATTGGAAACTTATCTCATTTGGAAATATTGGACTTTATGTGGAACAACATAAGTGGAACTATTCCAAAAGAAATTGGCAATATCAAAACTTTGAAACTCTTGCTCTTGAATGGAAATCAATTAACAGGTCATTTACCAGAAGAGCTTGGCTATCTTCCAGTTTTGAACAGAATACAAATTGATGAGAACAATATTACAGGACCAATACCTTTATCCTTTGCAAACCTGACAAATGCACAACACTTTCATATGAACAACAATTCACTTAGTGGACAAATTCCTTCACAACTTTCTGGCTTAAGAAACCTTCTTCACCTTCTTCTTGACAACAACAATTTATCAGGACACCTCCCAGATGAACTTGCAGAGATGCCAAACCTAAATATACTTCAACTTGATAACAACAACTTTGGTGGAAATAGCATTCCAGATTCTTATAGCAACATGTCAAAGTTATTGAAATTGAGCCTTAGGAACTGCAACTTAACAGGACCGATTCCTGATTTAAGCAGGATACCGCACCTTGGTTATCTTGATCTCAGTTTCAATCAATTGAGTGAAACTATTCCTAGTAATAAGCTATCTGAAAATATCACAACCATTGATTTATCAAATAATAAGCTTACTGGAATTATTCCTTCTTACTTTTCTGATCTTCCTCATCTTCAGAAATTGTCAATTTCAAACAACGAACTAAGTGGCGATGTTCCCTCTTCCATTTGGCAGAACAAGACTTTAAATGGAACAGATAAGCTTTTCTTGGACATGCAAAATAACCAACTTACGACCATATCAGGCAACATAACAAATCTTCCTCCAAATATCACAATCCTGCTTGAGGGGAATCCTATATGCTCAAATAATAACAATACCTTAGTTCAATTATGTGGATCTGAAAATGAAACTGATATGAATGGTAACTTCAATATTGTTTGTCCAAGTCAACCATGCCCTCCTCCATATGAATACTCTTTGGAGTGTGTCTGTGTAGTACCATTGCTCGTTCATTATCGGTTGAAAAGTCCCGGATTTTCAGATTTCAATACATATGTGGAAGAGTTTGAAAGCTTCTTAACAAGTGGTCTTAACATACATAGTAATCAGCTATTCATTACTAGTTTTGTTTGGGAAGAAGGTCGATTGAGAATGTACTTGAAGCTTTTTCCGGTTTCTGTTGATAATACAACGCATCATACTTTCAATCAAAGCGAGGTTATTCGATTAAGAGACATGTTCAGAGAATGGGATATAAATGAGAGTGACTTGTTTGGGCCTTATGAACTTCTTGACTTTGTTCTCCTCGATCCTTACAAAGAGATGACTATCTCCTCTTCGAGTTCAGGAATAAGCAAAGGTGCATTGGTTGGAATCGTGTTAGGTGCAATTGCATGTTCAATTACATTATCTGTAATTGTTGCTATTCTTATATTTAGAATACGTTTGAAAGATTACCGTACACTTTCCAGACGGCTTAAAACTTCGAAGATCTCAATAAAAGTTGATGGTGTAAGATCTTTCAATTATGAAGAAATGACTTTGGCTACAAACAATTTCAGCCAATCTGCGCAAGTTGGACAAGGCGGGTATGGGAAGGTTTATAAAGGAAATCTACCTGATGGAACTGTTGTTGCCATTAAACGTGCGCAAGAAGGTTCACTACAAGGTGAGAAGGAGTTTCTTACAGAAATACAACTGTTATCGAGGTTACATCATCGCAACCTTGTGTCTCTGATTGGATATTGTGATGAAGATGGTGAACAGATGCTGGTTTATGAATATATGCCAAATGGAACACTGAGGGATCACCTTTCTGCTCACTCTAAAGAACCTCTTAGTTTTCCCATGAGATTGAAGATTGCTCTAGGGTCAGCCAAAGGTCTTGTGTATCTACACACAGAGGCTGATCCTCCAATATTCCACAGAGATGTCAAAGCTAGCAACATATTGTTAGACTCAAAGTTCATAGCAAAAGTTGCTGATTTTGGACTTTCAAGACTAGCTCCAGTCCCAGATATTGAAGGCAATTTGCCTAATCATATATCTACAGTTGTAAAGGGGACCCCGGGTTACCTTGATCCGGAGTACTTTTTAACTCGCAAGTTGACCGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAAATTGTTACTGGAAAGCCACCAATCTTCCATGGTGTAAATATTATTAGACAGGTTAAACTGGCATTCGAATCAGGTGGGACATTTTCGATCGTTGATAACCGAATGGGATTTTACACTTCTGAGATTGTGGAAAAGTTTTTAACATTGGGTTTAAAGTGTTGCAAAGATTCACCAGATGAAAGGCCTAAAATGACAGAAATAGCTAGAGAACTTGAGAACATATTGGCTATGATGCCTGAGTACCATGCCAAAAAGGGAGGTGAATATGATACAAGTGATTCTGGAACCACATTTAGTTCACAACCTTCATCATCTACTATAAAGAATCCTTTTATTTCAGAAGATATTTTGGGTAGTGACCTTGTTAGTGGTAATATACCTACCATTAGACCAAGATAG 2832 0.3757 MKYFSRGCKCEVFFCFLFCCFLLASSQRTDPSEAVTLRRIRDNLIDINGNLSSWSRGDPCSSKWTGVMCSIVDGYLHVQRLHLMNMSLAGFLAPEIGNLSHLEILDFMWNNISGTIPKEIGNIKTLKLLLLNGNQLTGHLPEELGYLPVLNRIQIDENNITGPIPLSFANLTNAQHFHMNNNSLSGQIPSQLSGLRNLLHLLLDNNNLSGHLPDELAEMPNLNILQLDNNNFGGNSIPDSYSNMSKLLKLSLRNCNLTGPIPDLSRIPHLGYLDLSFNQLSETIPSNKLSENITTIDLSNNKLTGIIPSYFSDLPHLQKLSISNNELSGDVPSSIWQNKTLNGTDKLFLDMQNNQLTTISGNITNLPPNITILLEGNPICSNNNNTLVQLCGSENETDMNGNFNIVCPSQPCPPPYEYSLECVCVVPLLVHYRLKSPGFSDFNTYVEEFESFLTSGLNIHSNQLFITSFVWEEGRLRMYLKLFPVSVDNTTHHTFNQSEVIRLRDMFREWDINESDLFGPYELLDFVLLDPYKEMTISSSSSGISKGALVGIVLGAIACSITLSVIVAILIFRIRLKDYRTLSRRLKTSKISIKVDGVRSFNYEEMTLATNNFSQSAQVGQGGYGKVYKGNLPDGTVVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVSLIGYCDEDGEQMLVYEYMPNGTLRDHLSAHSKEPLSFPMRLKIALGSAKGLVYLHTEADPPIFHRDVKASNILLDSKFIAKVADFGLSRLAPVPDIEGNLPNHISTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLEIVTGKPPIFHGVNIIRQVKLAFESGGTFSIVDNRMGFYTSEIVEKFLTLGLKCCKDSPDERPKMTEIARELENILAMMPEYHAKKGGEYDTSDSGTTFSSQPSSSTIKNPFISEDILGSDLVSGNIPTIRPR 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03872 943 Pfam Leucine rich repeat 292 341 IPR001611 GO:0005515
Trre10g03872 943 Gene3D Phosphorylase Kinase; domain 1 584 688 - -
Trre10g03872 943 Gene3D Ribonuclease Inhibitor 189 290 IPR032675 -
Trre10g03872 943 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Trre10g03872 943 Gene3D Ribonuclease Inhibitor 291 407 IPR032675 -
Trre10g03872 943 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Trre10g03872 943 Pfam Protein tyrosine and serine/threonine kinase 616 882 IPR001245 GO:0004672|GO:0006468
Trre10g03872 943 ProSiteProfiles Protein kinase domain profile. 613 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03872 943 ProSiteProfiles Leucine-rich repeat profile. 269 290 IPR001611 GO:0005515
Trre10g03872 943 CDD STKc_IRAK 619 885 - -
Trre10g03872 943 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 689 898 - -
Trre10g03872 943 SUPERFAMILY L domain-like 44 413 - -
Trre10g03872 943 SMART serkin_6 613 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03872 943 Gene3D Transferase(Phosphotransferase) domain 1 689 903 - -
Trre10g03872 943 FunFam Leucine-rich repeat protein kinase family protein 577 688 - -
Trre10g03872 943 MobiDBLite consensus disorder prediction 897 921 - -
Trre10g03872 943 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Trre10g03872 943 PANTHER RECEPTOR-LIKE PROTEIN 55 46 885 - -
Trre10g03872 943 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 31 189 - -
Trre10g03872 943 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Trre10g03872 943 SUPERFAMILY Protein kinase-like (PK-like) 598 894 IPR011009 -
Trre10g03872 943 MobiDBLite consensus disorder prediction 901 921 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03872 Trre-Chr10 48070006 48077771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03872 19 895 Receptor kinase-like Gene Family AT5G01950 57.111 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre10g03872 PK_Tyr_Ser-Thr 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03872 - - gmx:100801035 1353.19