Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03870 ATGAAGTTCTACATACCTCCGCTGCAATCTTTCCTTTTTATCATTGTAATTCTTTTTCCTCTTGTTATTGCTGACCTGAATTCCGATAAGCAAGCCCTTCTTAATTTTGTTTCTTCTGTTCCTCATCGTCGGAACCTTAAATGGGACCTAGCTACCTCAATATGTACATCTTGGATAGGCATAACTTGTAATCCAAACCAAACTCGTGTTGTTTCTGTCCGGCTCCCTGCAGTCGGATTAGTAGGCACCATTCCAGCTGATACACTCGGCAAAATTGACTCGCTCAAAACTCTAAGCCTTCGCTCAAACCTACTTAGTGGAAGTCTACCTCATGATATTACTTCTCTTCCGTCTCTACAATATCTCTTCCTTCAACATAATAATCTTTCTGGTGAATTGCCAACCTCATTGTCGTCGCAACTCAATGCACTTGTTTTGTCATACAATTCATTTAAAGGTAGAATTCCAAAGACATTGCAAAACTTAACACAATTAACTCGATTGAGCCTCGAGAACAACTCGTTATCTGGACCGATACCTGATTTCCATGTCAATCTCAAACATTTGAATTTAAGCTACAACCATTTCAATGGCTCTATCCCTTCATCTCTTCATAATTTCTCAAGTTCTTCCTTTGAAGGAAACTCCCTCTTGTGTGGATTACCTCTAAAGCCGTGCTCCGGTGTCCCTCCTTCATCGGCTCCTCCTGCATTGGCTCTTGTAAAACACAGCTCAAAAAAGAAACTGAGTAAAGGAGCTATCATTGCAATTGCTGTTGGGGGAGCTGTGCTGTTGTTTTTCGTAGCACTTGTCATTGTTCTTTGTTGTTTAAAGAAAAAAGATAACGGAACCTCGAGAGAAGTTAAAGCGAAGGGTCCTATTGGTGGCGGTGGTGGAAGGACTGAAAAGCCGAAAGAAGAGTTTGGAAGTGGAGTTCAAGAATCTGAGAAAAACAAATTGGTTTTCTTTGAGGGCTGCTCTTATAATTTTGATCTTGAGGATTTGTTGAGGGCTTCGGCCGAGGTTCTCGGAAAGGGTAGTTACGGTACTGCATATAAGGCTATTTTGGAAGAGGCAATGACAGTTGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGAAAGAGGGAATTTGAACAGCAGATGGAGATTATAGGAAGCATTGGAAGTCACCCGAATGTCGTTCCGCTTCGTGCTTATTATTATTCGAAGGATGAGAAGCTTTTGGTTTGTGACTATTACCCAAATGGCAATCTATCTATACTCTTGCATGGTACTAGGACAGGCGGAAGAACAACTTTAGATTGGAACACGCGAGTAAAAATCACTCTCGGAATTGCCCGAGGAATTGCTCATTTACATTCAGTTGGTGGTCCAAAATTCGCACATGGAAATGTGAAATCCTCCAATGTCCTCCTAAATCAAGATAACGATGGCTGCATTTCCGATTTCGGCTTGACTCCGCTCATGAACATGCCGGCAACCCCTTCTAGAGCCGTAGGCTACCGTGCTCCCGAGGTAATTGAAACTCGGAAGCACACTCATAAATCAGATGTATACAGTTTTGGCGTCCTCCTTTTGGAAATGCTTACAGGTAAAGCGCCACAACAGTCGCCGGTACGCGATGACATGGTTGATCTCCCTAGATGGGTTCAGTCTGTTGTTAGGGAGGAGTGGACCGCCGAGGTATTCGATGTGGAGCTAATGAGATACCAAAATATTGAAGAAGAAATGATGCAAATGTTGCAAATTGGCATGGCTTGTGTCGCAAAGGTTCCGGATATGAGGCCTAACATGGAGGAAGTAGTTAGACTGATTGAAGAAATTCGGCAATCTGACTCGGATAACCGACCGTCTTCTGACGATAATAAATCCAAGGATTTAACTGTTCAAACTCCATGA 1899 0.426 MKFYIPPLQSFLFIIVILFPLVIADLNSDKQALLNFVSSVPHRRNLKWDLATSICTSWIGITCNPNQTRVVSVRLPAVGLVGTIPADTLGKIDSLKTLSLRSNLLSGSLPHDITSLPSLQYLFLQHNNLSGELPTSLSSQLNALVLSYNSFKGRIPKTLQNLTQLTRLSLENNSLSGPIPDFHVNLKHLNLSYNHFNGSIPSSLHNFSSSSFEGNSLLCGLPLKPCSGVPPSSAPPALALVKHSSKKKLSKGAIIAIAVGGAVLLFFVALVIVLCCLKKKDNGTSREVKAKGPIGGGGGRTEKPKEEFGSGVQESEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEEAMTVVVKRLKEVVVGKREFEQQMEIIGSIGSHPNVVPLRAYYYSKDEKLLVCDYYPNGNLSILLHGTRTGGRTTLDWNTRVKITLGIARGIAHLHSVGGPKFAHGNVKSSNVLLNQDNDGCISDFGLTPLMNMPATPSRAVGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPVRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMMQMLQIGMACVAKVPDMRPNMEEVVRLIEEIRQSDSDNRPSSDDNKSKDLTVQTP 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03870 632 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524
Trre10g03870 632 Pfam Leucine Rich Repeat 185 207 IPR001611 GO:0005515
Trre10g03870 632 MobiDBLite consensus disorder prediction 608 632 - -
Trre10g03870 632 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Trre10g03870 632 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Trre10g03870 632 Pfam Leucine rich repeat 83 129 IPR001611 GO:0005515
Trre10g03870 632 MobiDBLite consensus disorder prediction 608 623 - -
Trre10g03870 632 FunFam Leucine-rich repeat receptor-like protein kinase 139 226 - -
Trre10g03870 632 FunFam Leucine-rich repeat receptor-like protein kinase 28 138 - -
Trre10g03870 632 ProSiteProfiles Protein kinase domain profile. 337 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03870 632 FunFam pollen receptor-like kinase 1 305 412 - -
Trre10g03870 632 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Trre10g03870 632 PANTHER OS05G0588300 PROTEIN 12 620 - -
Trre10g03870 632 Pfam Protein kinase domain 340 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03870 632 Gene3D Ribonuclease Inhibitor 186 227 IPR032675 -
Trre10g03870 632 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 619 - -
Trre10g03870 632 MobiDBLite consensus disorder prediction 287 310 - -
Trre10g03870 632 Gene3D Transferase(Phosphotransferase) domain 1 413 631 - -
Trre10g03870 632 SUPERFAMILY Protein kinase-like (PK-like) 341 614 IPR011009 -
Trre10g03870 632 SUPERFAMILY L domain-like 29 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03870 Trre-Chr10 48033637 48035940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03870 8 630 Receptor kinase-like Gene Family AT5G58300 67.823 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre10g03870 Pkinase 2.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03870 - - gmx:100818344 933.324