Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03869 ATGACAGAAGTTACCTTGAATTCAATTGTCAATATCTTATACCTTACAGTTAAAAAAGTCTCCATGAAGTTCTACATACCTCCGCTGCAATCTTTCCTTTTTATCATTGTAATTCTTTTTCCTCTTGTTATTGCTGACCTGAATTCCGATAAGCAAGCCCTTCTTAATTTTGTTTCTTCTGTTCCTCATCGTCGGAACCTTAAATGGGACCTAGCTACCTCAATATGTACATCTTGGATAGGCATAACTTGTAATCCAAACCAAACTCGTGTTGTTTCTGTCCGGCTCCCTGCAGTCGGATTAGTAGGCACCATTCCAGCTGATACACTCGGCAAAATTGACTCGCTCAAAACTCTAAGCCTTCGCTCAAACCTACTTAGTGGAAGTCTACCTCATGATATTACTTCTCTTCCGTCTCTACAATATCTCTTCCTTCAACATAATAATCTTTCTGGTGAATTGCCAACCTCATTGTCGTCGCAACTCAATGCACTTGTTTTGTCATACAATTCATTTAAAGGTAGAATTCCAAAGACATTGCAAAACTTAACACAATTAACTCGATTGAGCCTCGAGAACAACTCGTTATCTGGACCGATACCTGATTTCCATGTCAATCTCAAACATTTGAATTTAAGCTACAACCATTTCAATGGCTCTATCCCTTCATCTCTTCATAATTTCTCAAGTTCTTCCTTTGAAGGAAACTCCCTCTTGTGTGGATTACCTCTAAAGCCGTGCTCCGGTGTCCCTCCTTCATCGGCTCCTCCTGCATTGGCTCTTGTAAAACACAGCTCAAAAAAGAAACTGAGTAAAGGAGCTATCATTGCAATTGCTGTTGGGGGAGCTGTGCTGTTGTTTTTCGTAGCACTTGTCATTGTTCTTTGTTGTTTAAAGAAAAAAGATAACGGAACCTCGAGAGAAGTTAAAGCGAAGGGTCCTATTGGTGGCGGTGGTGGAAGGACTGAAAAGCCGAAAGAAGAGTTTGGAAGTGGAGTTCAAGAATCTGAGAAAAACAAATTGGTTTTCTTTGAGGGCTGCTCTTATAATTTTGATCTTGAGGATTTGTTGAGGGCTTCGGCCGAGGTTCTCGGAAAGGGTAGTTACGGTACTGCATATAAGGCTATTTTGGAAGAGGCAATGACAGTTGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGAAAGAGGGAATTTGAACAGCAGATGGAGATTATAGGAAGCATTGGAAGTCACCCGAATGTCGTTCCGCTTCGTGCTTATTATTATTCGAAGGATGAGAAGCTTTTGGTTTGTGACTATTACCCAAATGGCAATCTATCTATACTCTTGCATGGTACTAGGACAGGCGGAAGAACAACTTTAGATTGGAACACGCGAGTAAAAATCACTCTCGGAATTGCCCGAGGAATTGCTCATTTACATTCAGTTGGTGGTCCAAAATTCGCACATGGAAATGTGAAATCCTCCAATGTCCTCCTAAATCAAGATAACGATGGCTGCATTTCCGATTTCGGCTTGACTCCGCTCATGAACATGCCGGCAACCCCTTCTAGAGCCGTAGGCTACCGTGCTCCCGAGGTAATTGAAACTCGGAAGCACACTCATAAATCAGATGTATACAGTTTTGGCGTCCTCCTTTTGGAAATGCTTACAGGTAAAGCGCCACAACAGTCGCCGGTACGCGATGACATGGTTGATCTCCCTAGATGGGTTCAGTCTGTTGTTAGGGAGGAGTGGACCGCCGAGGTATTCGATGTGGAGCTAATGAGATACCAAAATATTGAAGAAGAAATGATGCAAATGTTGCAAATTGGCATGGCTTGTGTCGCAAAGGTTCCGGATATGAGGCCTAACATGGAGGAAGTAGTTAGACTGATTGAAGAAATTCGGCAATCTGACTCGGATAACCGACCGTCTTCTGACGATAATAAATCCAAGGATTTAACTGTTCAAACTCCATGA 1962 0.422 MTEVTLNSIVNILYLTVKKVSMKFYIPPLQSFLFIIVILFPLVIADLNSDKQALLNFVSSVPHRRNLKWDLATSICTSWIGITCNPNQTRVVSVRLPAVGLVGTIPADTLGKIDSLKTLSLRSNLLSGSLPHDITSLPSLQYLFLQHNNLSGELPTSLSSQLNALVLSYNSFKGRIPKTLQNLTQLTRLSLENNSLSGPIPDFHVNLKHLNLSYNHFNGSIPSSLHNFSSSSFEGNSLLCGLPLKPCSGVPPSSAPPALALVKHSSKKKLSKGAIIAIAVGGAVLLFFVALVIVLCCLKKKDNGTSREVKAKGPIGGGGGRTEKPKEEFGSGVQESEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEEAMTVVVKRLKEVVVGKREFEQQMEIIGSIGSHPNVVPLRAYYYSKDEKLLVCDYYPNGNLSILLHGTRTGGRTTLDWNTRVKITLGIARGIAHLHSVGGPKFAHGNVKSSNVLLNQDNDGCISDFGLTPLMNMPATPSRAVGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPVRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMMQMLQIGMACVAKVPDMRPNMEEVVRLIEEIRQSDSDNRPSSDDNKSKDLTVQTP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03869 653 MobiDBLite consensus disorder prediction 629 653 - -
Trre10g03869 653 ProSiteProfiles Protein kinase domain profile. 358 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03869 653 FunFam Leucine-rich repeat receptor-like protein kinase 49 159 - -
Trre10g03869 653 Gene3D Ribonuclease Inhibitor 47 204 IPR032675 -
Trre10g03869 653 MobiDBLite consensus disorder prediction 629 644 - -
Trre10g03869 653 SUPERFAMILY L domain-like 50 247 - -
Trre10g03869 653 Gene3D Ribonuclease Inhibitor 207 248 IPR032675 -
Trre10g03869 653 ProSitePatterns Protein kinases ATP-binding region signature. 364 395 IPR017441 GO:0005524
Trre10g03869 653 Gene3D Phosphorylase Kinase; domain 1 326 433 - -
Trre10g03869 653 MobiDBLite consensus disorder prediction 308 331 - -
Trre10g03869 653 Pfam Protein kinase domain 361 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03869 653 FunFam pollen receptor-like kinase 1 326 433 - -
Trre10g03869 653 Pfam Leucine rich repeat 104 150 IPR001611 GO:0005515
Trre10g03869 653 SUPERFAMILY Protein kinase-like (PK-like) 362 635 IPR011009 -
Trre10g03869 653 Pfam Leucine Rich Repeat 206 228 IPR001611 GO:0005515
Trre10g03869 653 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 434 640 - -
Trre10g03869 653 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Trre10g03869 653 PANTHER OS05G0588300 PROTEIN 33 641 - -
Trre10g03869 653 Gene3D Transferase(Phosphotransferase) domain 1 434 652 - -
Trre10g03869 653 FunFam Leucine-rich repeat receptor-like protein kinase 160 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03869 Trre-Chr10 48033637 48036003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03869 29 651 Receptor kinase-like Gene Family AT5G58300 67.823 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre10g03869 Pkinase 2.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03869 - - gmx:100818344 962.214