Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03865 ATGTCTCTTCAGAAGCTCAAGCAGTTGAAACTGGAAACACCAAGTTCAGTTTTTGAAGATGACCCATCAATCAAAAGAAAGAGAAAACCCAAAAGAAAGCTTCTTCGTATCATAATCACCGACCATGATGCCACTGATTCTGATTCCTCCGATGAAGAGAGAGAGAAAAACAACCAAAACAGAACAGAGAGAAAGGGAAAGGGAAAGAGAGAAATCTTTGAAATTAACATGCCCCGTCCCGTACTAGATTCTTCTTTCTCATTTTCTTCTCCCTCATCTTCTTATTCATCGGAGAAAACCCAAAAAAGACGCAACAGACACAAGAAAACACCACCACCAACCTCCGCCGTCACGCTCCACCACAACAAGTACCGTGGTGTAAGACAGCGGCCGTGGGGAAAATGGGCTGCTGAGATCCGTGACCCGACCCGCCGGAAACGTCTCTGGCTTGGAACATTCCTAACGGCGGAGGAAGCCGCCGCTGAGTACGACAGAGTAGCCGTGATTTTAAAAGGTCCTAACGCCGTTACCAACTTTCCGGTAACATCAACCGAAGCAGAAACTGAAGTTCCGCCGCCGGAAAATAACTCCGGTGGGATTTACGGCGGAGCTGGTTACTCCGACGCTTTGGCTTCTCCGACGTCTGTTTTAACTTACTGTGAGTCGACGCCGTTTGACGGTTTCCGTTACTGTGACGTGGATGCTTTTGGGTTTAACATTGACGCGCCGTTAAGTTTGCCGGAAGTTAACGTTACGCCGACGTGTCATCAGAAATTGGAAAAAGAAGAAGCGTTTGAAGAGTTTAATCTTGACGAGTTTATGACGTGGCCGTACTGA 837 0.4731 MSLQKLKQLKLETPSSVFEDDPSIKRKRKPKRKLLRIIITDHDATDSDSSDEEREKNNQNRTERKGKGKREIFEINMPRPVLDSSFSFSSPSSSYSSEKTQKRRNRHKKTPPPTSAVTLHHNKYRGVRQRPWGKWAAEIRDPTRRKRLWLGTFLTAEEAAAEYDRVAVILKGPNAVTNFPVTSTEAETEVPPPENNSGGIYGGAGYSDALASPTSVLTYCESTPFDGFRYCDVDAFGFNIDAPLSLPEVNVTPTCHQKLEKEEAFEEFNLDEFMTWPY 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03865 278 MobiDBLite consensus disorder prediction 36 76 - -
Trre10g03865 278 Pfam AP2 domain 123 166 IPR001471 GO:0003700|GO:0006355
Trre10g03865 278 MobiDBLite consensus disorder prediction 1 118 - -
Trre10g03865 278 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 221 - -
Trre10g03865 278 MobiDBLite consensus disorder prediction 82 98 - -
Trre10g03865 278 CDD AP2 123 182 IPR001471 GO:0003700|GO:0006355
Trre10g03865 278 Gene3D AP2/ERF domain 122 182 IPR036955 GO:0003700|GO:0006355
Trre10g03865 278 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Trre10g03865 278 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Trre10g03865 278 PIRSF PTI6 1 278 IPR017392 GO:0003700
Trre10g03865 278 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Trre10g03865 278 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Trre10g03865 278 FunFam Ethylene-responsive transcription factor 2 122 181 - -
Trre10g03865 278 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03865 Trre-Chr10 48002903 48003739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03865 1 228 AP2-EREBP Transcription Factor Family AT4G27950 41.949 3.88e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g03865 AP2 1.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03865 K13434 - gmx:100800489 293.893