Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03853 ATGGGGGTTGAAGTTTGCATGAATAATTTCTGTAAGGAAGGTTCTGTTGGTGAATGGAAGAAAGGTTGGTCTTTGATCTCTGGTGGATTTGCTAAACTCTGCAACAAATGCGGACTTGCGTATGAGAATTCAGTTTTCTGCGATCAATTCCACCGTCTTGAATCCGGTTGGAGGGAATGCAGCAAATGCAAAAAGCTTATCCACTGCGGATGTATAGCATCAAAGTCTTTGTTCGAGTATCTTGATTTCGGTGGCATAGGTTGTGTTACCTGTGTTAAGGCTTCCCAGCTTTGTCTGGATACGGGGAATGCTAATAGGTTTGCTCATATAACCAAAAACAATGCAAGTGATCGATATGTTGAACGTACCGATGGTGGACTATCGGTGGAACATGTTGGTAAAGAAAACCTTATGCAGTTGCGTAAAACTGCTGAAGCTGGCGAAACAAGCTTTTGGCCACAAGTTCGAAGAGATGGTGTGTTTTCAACTATTGGTTCAAAAAGCGAAGAAATTAATTGTCGATTCAACAAAACTGATACAGGATTTTTAAATGCGATGAAACATTCTACTCATTTATCGACATTTACTACATCGGAGAATAATAGACCAATATGGGAGACCAAAAGTAGAGATGAACCACTTTCGCTGAAGATTTCTCTTGGAACCTCATCGAGAAATTGTCTCCTGCCTTCTGCCACAGAGATTTTAGAAGGTAAACTTGAGGGTAAAGCATCGTCTATTTCTCAACAAGGGCTAAATACTTACCCTATATTGGCTAAACAATCGAAGACCGGTGTTACCATGAATCTTGAAACAAATAAAAGCATGATTTCTCATCCACGCATTGGTCGGCCACCTGCTGATATGAAAGGGAAAAATCAGCTACTTTCTCGATACTGGCCAAGGATTACTGATCAAGAGCTGGAGAAATTGTCTGGGGATTTGAAGTCTAAGATAGTGCCGTTATTTGAGAAGGTGTTAAGTCCGAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCATGTGCTGAGCATTTTCTTCCTCCCATTGTGCATTCAGAAGGTGTCCCTTTACAGTTCCAAGATATTAAGGGGAACGAGTGGACTTTTCAGTTCAGATTTTGGCCGAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAATTCTTGCGGTTAAATGCTGGCGATACTGTAACATTTAGTCGGATAGATCCCGGGGAAAAATTTGTAATTGGTTTTAGAAGAGCATCAGGTTCTATCGATACGCAGGATGAATCTACATCTGCTCATTCTAACGGGATTTCGACTAAGGATACAAGTGTTTCTGGTGCAACTAAGAATCATAACTCATTAAGTAGTTTTTCTGATCTTCTTCAATCAATGAAAGGTAATGGCGGGGAACCTTACTTAAACGGACATTCAGAACATCTGCATTTGGGTAATGGAACTGCTGATTGGCTGAAAACTGCACATCCGGAGGAGGCGGTGAACAATGGTCCATTGCAGCAACTGCTTTCGGTTTCAGAAAAGAAGAGTACTTGCAAGATTGGGACAAAAACTAAGAGGTTGCACATTCGTAGCGAAGATTCTTTGGAGTTAAGACTTACATGGGAAGAAGCACAAGACTTGCTTTGTCCGCCGCCTAATGTCAAGCCAAATATTGTACAAATTGACGACCAAGTATTCGAAGAATATGATGAACCACCGGTTTTCGGAAAGGGAACTATAACCAATGCCTGTCCATGTGGGTCTTCAGGTGATGCGTCAGAGCAGGTCGGTCCAAACGAACAAGAAAATCTTCTGCAAACCAGAAAAGTTTCTAAAAAGCGTAAAGTTGTAGAAAAGAGTGGAGTCACGACAAAACATCCAAGACATCGTCATGGATGCACTTGTATCGTCTGCATTCAACCTCCAAGTGGACAAGGAAAACATAAACTGACATGCACTTGCCTTGCCTGCGAAACTTTGAAGCGTAGGTCCAAGACTCTTATGATGCGCAAGAAGAAAAACCAATCAGAATCTGAAGCAGCCGCTCCCCAAAATGATCAAACGAATCATAGTGGTGAAGCAGATACCAATGGTGGTGCATCAAGACAAGATACAAGTCACTCAACGGACGAGGTAAGCCTAAACGGTGGTCAGCAAGAGGTTGTTGAGCCGAGTGCCGTGGGACAATTAGATTTGAATTGTCATCCTAATCATGAAGAATATGGAAATGGATACATATAA 2250 0.4196 MGVEVCMNNFCKEGSVGEWKKGWSLISGGFAKLCNKCGLAYENSVFCDQFHRLESGWRECSKCKKLIHCGCIASKSLFEYLDFGGIGCVTCVKASQLCLDTGNANRFAHITKNNASDRYVERTDGGLSVEHVGKENLMQLRKTAEAGETSFWPQVRRDGVFSTIGSKSEEINCRFNKTDTGFLNAMKHSTHLSTFTTSENNRPIWETKSRDEPLSLKISLGTSSRNCLLPSATEILEGKLEGKASSISQQGLNTYPILAKQSKTGVTMNLETNKSMISHPRIGRPPADMKGKNQLLSRYWPRITDQELEKLSGDLKSKIVPLFEKVLSPSDAGRIGRLVLPKACAEHFLPPIVHSEGVPLQFQDIKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQFLRLNAGDTVTFSRIDPGEKFVIGFRRASGSIDTQDESTSAHSNGISTKDTSVSGATKNHNSLSSFSDLLQSMKGNGGEPYLNGHSEHLHLGNGTADWLKTAHPEEAVNNGPLQQLLSVSEKKSTCKIGTKTKRLHIRSEDSLELRLTWEEAQDLLCPPPNVKPNIVQIDDQVFEEYDEPPVFGKGTITNACPCGSSGDASEQVGPNEQENLLQTRKVSKKRKVVEKSGVTTKHPRHRHGCTCIVCIQPPSGQGKHKLTCTCLACETLKRRSKTLMMRKKKNQSESEAAAPQNDQTNHSGEADTNGGASRQDTSHSTDEVSLNGGQQEVVEPSAVGQLDLNCHPNHEEYGNGYI 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03853 749 SMART B3_2 323 424 IPR003340 GO:0003677
Trre10g03853 749 ProSiteProfiles B3 DNA-binding domain profile. 323 424 IPR003340 GO:0003677
Trre10g03853 749 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 743 - -
Trre10g03853 749 SUPERFAMILY DNA-binding pseudobarrel domain 320 422 IPR015300 -
Trre10g03853 749 MobiDBLite consensus disorder prediction 428 454 - -
Trre10g03853 749 MobiDBLite consensus disorder prediction 681 725 - -
Trre10g03853 749 Gene3D - 301 426 IPR015300 -
Trre10g03853 749 MobiDBLite consensus disorder prediction 670 749 - -
Trre10g03853 749 Pfam B3 DNA binding domain 323 423 IPR003340 GO:0003677
Trre10g03853 749 CDD B3_DNA 321 422 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03853 Trre-Chr10 47816639 47822021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03853 3 675 B3 DNA Binding Superfamily AT4G32010 40.374 1.74e-170 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre10g03853 B3 1.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03853 K09287 - psat:127118438 1024.62