Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03850 ATGCAACATCAATCTTCAAACCCTAATCCCAATCCCAATCCTCACAATGCAAACACCGCATCCCAATTGCCACCACCAGCGCCACCATCATCTACGGCGGCGACAACCGCCGCCGGCAAATCCTCTCTATTCGCGCGCTCAAGCGGCAATGTCAGTTCCCATCACCGGCGAGCTCATTCGGAAGTCAATTTCCGGTTACCAGACGACATGATGGACTTATCACCGTCCGATCCATTCACCGGCGGATCGTCAACGGCGAGCTTAGATGAGATCGGATCCGAAGACGACCTATTCTCGACTTACATTGATATGGATAAGCTCGGAGGTTCGAATGAGTTGGGAGACGCCGGAGTAGATCTGGTTGGAAATGATGCGCCGGAGAAGAATCCGGTGAGGCCGAGGCATAGGCACAGTAATTCCGTTGATGGTTCTTCGTCGTTTGCGGAGATTATGGATGGGAAGAAAGCTATGCCTCCTGATAAGTTAGCTGAACTTTGGTCTATTGATCCAAAGCGTGCAAAGAGAATACTTGCAAATCGACAGTCTGCTGCTCGTTCAAAAGAGAGAAAGGCCCGATATATACATGAACTAGAGCGCAAAGTTCAGACCCTGCAAACTGAAGCTACAACTCTTTCTGCCCAACTGACACTATATCAGAGGGACACATCAGGTCTGAGTACTGAAAATACAGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAACAAGCGCATCTTCGTGATGCTCTTAATGATGCACTGAAGAAAGAAGTTGAGAGGCTGAAAGTTGCTACCGGGGATATAATGAGCCACACTCAGTCTTTTAATCTTGGTATGCATCAGATGCAATTTACAGAATCAAATTTCGCTTCAATTCCACCGCAACCTGGTTCTTCTAATCACCGGAACACCCAGATGCCACTATTTGGTCACTCCCCATCTAGCATGCCATCTCATCAACTGCACCAAACAAATTCTCATTCATTTACAGAATTATTGCAAAATGACCAGATTGGTCGTTTTCAGGGACTTGACATTAGTAGTAAAGGAACAACTGTTGTAAAGTCTGAAGACCCCTCTCTTTCTGCAAGTGAGAGTAGCACTACATTTTGA 1110 0.4694 MQHQSSNPNPNPNPHNANTASQLPPPAPPSSTAATTAAGKSSLFARSSGNVSSHHRRAHSEVNFRLPDDMMDLSPSDPFTGGSSTASLDEIGSEDDLFSTYIDMDKLGGSNELGDAGVDLVGNDAPEKNPVRPRHRHSNSVDGSSSFAEIMDGKKAMPPDKLAELWSIDPKRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTSGLSTENTELKLRLQAMEQQAHLRDALNDALKKEVERLKVATGDIMSHTQSFNLGMHQMQFTESNFASIPPQPGSSNHRNTQMPLFGHSPSSMPSHQLHQTNSHSFTELLQNDQIGRFQGLDISSKGTTVVKSEDPSLSASESSTTF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03850 369 SMART brlzneu 167 231 IPR004827 GO:0003700|GO:0006355
Trre10g03850 369 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 20 333 - -
Trre10g03850 369 Gene3D - 170 222 - -
Trre10g03850 369 Coils Coil 187 214 - -
Trre10g03850 369 CDD bZIP_plant_RF2 172 221 IPR044759 GO:0003700|GO:0006355
Trre10g03850 369 Pfam bZIP transcription factor 171 229 IPR004827 GO:0003700|GO:0006355
Trre10g03850 369 MobiDBLite consensus disorder prediction 1 90 - -
Trre10g03850 369 MobiDBLite consensus disorder prediction 126 146 - -
Trre10g03850 369 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 169 232 IPR004827 GO:0003700|GO:0006355
Trre10g03850 369 FunFam probable transcription factor PosF21 170 223 - -
Trre10g03850 369 SUPERFAMILY Leucine zipper domain 171 222 IPR046347 GO:0003700|GO:0006355
Trre10g03850 369 MobiDBLite consensus disorder prediction 1 18 - -
Trre10g03850 369 MobiDBLite consensus disorder prediction 350 369 - -
Trre10g03850 369 MobiDBLite consensus disorder prediction 32 51 - -
Trre10g03850 369 MobiDBLite consensus disorder prediction 287 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03850 Trre-Chr10 47796538 47798983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03850 11 369 bZIP Transcription Factor Family AT2G40620 48.622 5.00e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre10g03850 bZIP_1 2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03850 - - vra:106763153 514.227