Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03848 ATGGCTTCTTCTACTTTGCTAGTTACTATGTTCTTTCTCTTCATTGATTTGCATTTTCATGGTGTTGCGGCTAACTACGGCGGTTGGCAGAGTGGTCATGCCACTTTCTATGGTGGCGGTGATGCTGCTGCCACAATGGGAGGTGCATGTGGTTATGGAAATTTGTACAATCAAGGATATGGAACCAACACTGCAGCTTTAAGCACATCTTTGTTCAACAATGGCTTAAGTTGTGGAGCTTGTTATGAAATGAGGTGTGTTGGTGACTCAAAATGGTGTAAACCTAGCACAATTGTTGTTACTGCCACAAACTTTTGTCCACCAAACTTGGCTTTGCCAAATAATAATGGTGGTTGGTGTAATCCTCCTCTACAACACTTTGATATGGCTGAACCAGCATTCCTTCAAATTGCACAATATAAAGCTGGAATTGTGCCTATAGCATTTAGAAGAGTGTCATGTATAAAAAAGGGAGGAATAAGGTTCACAATCAATGGCCATTCTTACTTCAATTTGGTTTTGGTCACCAACGTTGCCGGTGCAGGAGATGTCCATGCAGTCTCAATCAAAGGGTCCAAAACTAGCTGGCAAACTATGTCAAGAAATTGGGGACAAAATTGGCAAAGCAATTCCTACCTCAATGGACAAAGCCTCTCTTTTAAAGTCACCACCGGTGACGGTAGAACCGTGACAAGCTATAACGTGGCGCCGGCTAATTGGCAATTTGGTCAGACCTTTTAA 741 0.4251 MASSTLLVTMFFLFIDLHFHGVAANYGGWQSGHATFYGGGDAAATMGGACGYGNLYNQGYGTNTAALSTSLFNNGLSCGACYEMRCVGDSKWCKPSTIVVTATNFCPPNLALPNNNGGWCNPPLQHFDMAEPAFLQIAQYKAGIVPIAFRRVSCIKKGGIRFTINGHSYFNLVLVTNVAGAGDVHAVSIKGSKTSWQTMSRNWGQNWQSNSYLNGQSLSFKVTTGDGRTVTSYNVAPANWQFGQTF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03848 246 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Trre10g03848 246 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Trre10g03848 246 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Trre10g03848 246 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Trre10g03848 246 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Trre10g03848 246 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Trre10g03848 246 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Trre10g03848 246 PRINTS Expansin signature 234 246 IPR002963 GO:0009664
Trre10g03848 246 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Trre10g03848 246 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Trre10g03848 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Trre10g03848 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 246 IPR007117 -
Trre10g03848 246 FunFam Expansin 18 155 - -
Trre10g03848 246 Gene3D - 159 246 IPR036749 -
Trre10g03848 246 PANTHER EXPANSIN-A15 6 246 IPR002963 GO:0009664
Trre10g03848 246 Gene3D - 17 154 IPR036908 -
Trre10g03848 246 SMART dpbb_1 64 149 IPR007112 -
Trre10g03848 246 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Trre10g03848 246 CDD DPBB_EXPA_N 28 154 - -
Trre10g03848 246 PRINTS Expansin/Lol pI family signature 234 246 IPR007118 GO:0005576
Trre10g03848 246 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Trre10g03848 246 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Trre10g03848 246 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Trre10g03848 246 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Trre10g03848 246 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Trre10g03848 246 Pfam Lytic transglycolase 64 148 IPR009009 -
Trre10g03848 246 SUPERFAMILY PHL pollen allergen 156 246 IPR036749 -
Trre10g03848 246 FunFam Expansin 159 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03848 Trre-Chr10 47784058 47786372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03848 4 246 Expansin Gene Family AT2G40610 75.820 3.69e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03848 - - gmx:100816848 449.129