Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03847 ATGGAAAAACATTCAATGGCTTCTTCTACTTTGCTAGTTACTATGTTCTTTCTCTTCATTGATTTGCATTTTCATGGTGTTGCGGCTAACTACGGCGGTTGGCAGAGTGGTCATGCCACTTTCTATGGTGGCGGTGATGCTGCTGCCACAATGGGAGGTGCATGTGGTTATGGAAATTTGTACAATCAAGGATATGGAACCAACACTGCAGCTTTAAGCACATCTTTGTTCAACAATGGCTTAAGTTGTGGAGCTTGTTATGAAATGAGGTGTGTTGGTGACTCAAAATGGTGTAAACCTAGCACAATTGTTGTTACTGCCACAAACTTTTGTCCACCAAACTTGGCTTTGCCAAATAATAATGGTGGTTGGTGTAATCCTCCTCTACAACACTTTGATATGGCTGAACCAGCATTCCTTCAAATTGCACAATATAAAGCTGGAATTGTGCCTATAGCATTTAGAAGAGTGTCATGTATAAAAAAGGGAGGAATAAGGTTCACAATCAATGGCCATTCTTACTTCAATTTGGTTTTGGTCACCAACGTTGCCGGTGCAGGAGATGTCCATGCAGTCTCAATCAAAGGGTCCAAAACTAGCTGGCAAACTATGTCAAGAAATTGGGGACAAAATTGGCAAAGCAATTCCTACCTCAATGGACAAAGCCTCTCTTTTAAAGTCACCACCGGTGACGGTAGAACCGTGACAAGCTATAACGTGGCGCCGGCTAATTGGCAATTTGGTCAGACCTTTTAA 756 0.422 MEKHSMASSTLLVTMFFLFIDLHFHGVAANYGGWQSGHATFYGGGDAAATMGGACGYGNLYNQGYGTNTAALSTSLFNNGLSCGACYEMRCVGDSKWCKPSTIVVTATNFCPPNLALPNNNGGWCNPPLQHFDMAEPAFLQIAQYKAGIVPIAFRRVSCIKKGGIRFTINGHSYFNLVLVTNVAGAGDVHAVSIKGSKTSWQTMSRNWGQNWQSNSYLNGQSLSFKVTTGDGRTVTSYNVAPANWQFGQTF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03847 251 Gene3D - 164 251 IPR036749 -
Trre10g03847 251 CDD DPBB_EXPA_N 33 159 - -
Trre10g03847 251 SMART dpbb_1 69 154 IPR007112 -
Trre10g03847 251 FunFam Expansin 23 160 - -
Trre10g03847 251 Pfam Lytic transglycolase 69 153 IPR009009 -
Trre10g03847 251 SUPERFAMILY Barwin-like endoglucanases 33 182 IPR036908 -
Trre10g03847 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 251 IPR007117 -
Trre10g03847 251 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Trre10g03847 251 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Trre10g03847 251 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Trre10g03847 251 PRINTS Expansin/Lol pI family signature 239 251 IPR007118 GO:0005576
Trre10g03847 251 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Trre10g03847 251 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Trre10g03847 251 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Trre10g03847 251 PANTHER EXPANSIN-A15 10 251 IPR002963 GO:0009664
Trre10g03847 251 Gene3D - 23 159 IPR036908 -
Trre10g03847 251 FunFam Expansin 164 251 - -
Trre10g03847 251 PRINTS Expansin signature 239 251 IPR002963 GO:0009664
Trre10g03847 251 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Trre10g03847 251 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Trre10g03847 251 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Trre10g03847 251 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Trre10g03847 251 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Trre10g03847 251 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Trre10g03847 251 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Trre10g03847 251 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Trre10g03847 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 164 IPR007112 -
Trre10g03847 251 SUPERFAMILY PHL pollen allergen 161 251 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03847 Trre-Chr10 47784058 47786387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03847 9 251 Expansin Gene Family AT2G40610 75.820 4.08e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03847 - - gmx:100816848 449.129