Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03846 ATGGGTGGAAAGAAAGTGAAGCTTGCATTCATAGCCAAGGACTCAGCAAGAAAAGCAACATACAAGAAAAGGGTAAAAAGTTTGTTGAAGAAGCTCAATGAAATCACAACCCTATGTGGAATTAGTGGATGTGCTATAGTGTTCAATCCTGATAATATTGAACCACAAATTTGGCCATCCATTCAAGGAGTTCAAAGTGTGTTGTACCAATTCATGCATGTTCCCGAATTCCAACGGGACCGAAAGATGTTGAACCAGGAGAGTTACTTGAAGGAAAAGATCCAAAAGTTGAACGAGAAGTTAACGAAAAAAGCGAAGGATAATAGGAAAACGGAGAAAATTGTTCAATTGTATCGCTTTCTTGAGAAAGGGGACATTACTGAGGATTTAAGTGTTGGTGATCATGATGATCTCACATATCTGATTGATGAGAAAATGAAGGAAATTAATAGGAAGATGATGGAAATGGGGATCAATGATCAAAGTGCTCCAAGGTTTGTGAATGGTAGCTAA 513 0.3801 MGGKKVKLAFIAKDSARKATYKKRVKSLLKKLNEITTLCGISGCAIVFNPDNIEPQIWPSIQGVQSVLYQFMHVPEFQRDRKMLNQESYLKEKIQKLNEKLTKKAKDNRKTEKIVQLYRFLEKGDITEDLSVGDHDDLTYLIDEKMKEINRKMMEMGINDQSAPRFVNGS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03846 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Trre10g03846 170 Coils Coil 91 114 - -
Trre10g03846 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre10g03846 170 Gene3D - 14 121 IPR036879 GO:0003677|GO:0046983
Trre10g03846 170 PANTHER MADS BOX PROTEIN 4 153 - -
Trre10g03846 170 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre10g03846 170 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Trre10g03846 170 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Trre10g03846 170 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03846 Trre-Chr10 47779093 47779605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03846 1 153 Type I MADS-box Gene Family AT5G48670 43.137 1.62e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre10g03846 SRF-TF 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03846 - - tpra:123881962 263.848