Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03843 ATGGAGGATTTCAAGGAAGAGAATTGTTATGTGGAAACTGACCCAACTGGTCGCTATGGCAGATTTGGAGATGTTCTTGGAAAAGGAGCAATGAAGACAGTATACAAAGCAATTGATGAGGTTCTTGGAATAGAGGTAGCATGGAACCAAGTTAGACTCAATGAAGTACTTAATACACCGGACGATTTGCAGCGCCTTTACTCGGAGGTTCATCTCCTAAGTACCCTCAAACACCGATCGATCATGCGATTCTACACATCTTGGATTGATATTGATAACAAGGCCTTCAACTTTATCACAGAAATGTTCACATCAGGATCACTTAGAGAATACCGGAAGAAATATAAACGAGTAAGCATACAAGCAATAAAGAGTTGGGCGCGCCAAATCTTACAAGGCCTAGTTTTTCTACATGGACATGATCCACCTGTTATTCATAGGGACCTAAAATGTGATAACATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTTGGATTAGCTGCAATTCTCCAAGGTTCTCAATCAGCTCATAGTGTTATAGGTACACCGGAGTTCATGGCACCGGAAATGTATGAAGAAGAATACAATGAACTTGCTGATGTGTACTCATTCGGCATGTGTGTATTAGAAATGCTCACATCTGATTATCCATACAGTGAATGTACTAATCCAGCACAAATTTACAAGAAAGTGACATCGGGAAAGCTACCGATGTCATTCTTCCGCATTGAAGACACCGAAGCGCGGAGGTTCATTGGTAAATGTTTAGAGCCTGCAGCAAAGAGACCGTCCGCGAAAGATTTGTTGCTTGAGCCCTTTCTTTTGGCCGATGATACGTCGTCAGAAAAGAAGTTAGCAATTCAGAAGCCATTTTTGAATGACAGTGAGATGGAAAAACTTCAATTGAGAGATGAATTTTCAAGAACTCAAATGAAAGTAATTGGAAAGTTGAATCCTGAAGATGATACTATCTTTCTCAAAGTGCAAATTTCTGATAAGAATTGTTCTGTTAGGAATGTATATTTTCCCTTCGATATTCTCACCGACACGCCAATTGATGTTGCTATGGAGATGGTAAAAGAATTGGAGATTTATGTTTGGGATCCTTATGATATTGCAAATATGATTAATAGAGAGATATCTGCTTTGGTACCACATAGATGGAAAAATGAATGTTCAGATTCCTTCCACACATTCAATTATCAAGATGATGATGTCGATGAAAATCGTCATCATTTCCGCTCAATCTCTTCTAGTTCATCGTTACAAGAATTGATACCGGATTTTGTCAGTAAAAACGAGGAAATAGCGCACGGATATTATTTGCTTCATGATGATTTACATGATGATAATAGTTCAAGATGCTCTTCACAAGGGACATACTCAAATTGGAACTACTATTCTATGGATGACTATGAACACAATGCAGCTTCAATCAGAAAAGATCATAAGCTTCCTATAATAAAGAATCACAATAAAGGCACAAGGTTTTCTCCTGGTGAAGAGTTGAACAATTGTAATCAGTGTAGAGTTTCAGGAGGATCACAGAATCCTTCACCTAGTAAAAATAAGATGATGATGGAAAACCGAAAACTGACACGGAATAGGTCACTGATCGATACGCGGAGTCAATTGTTACACAAATCACTTGTTGATGAGTTGAACAAAAGGAGGCAATTCAAGACAGTTGGTTCTGTGGAGAATATTGGATTTCAGTCACCTTATGATGATTCTACAAAATAG 1755 0.3835 MEDFKEENCYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEVLNTPDDLQRLYSEVHLLSTLKHRSIMRFYTSWIDIDNKAFNFITEMFTSGSLREYRKKYKRVSIQAIKSWARQILQGLVFLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILQGSQSAHSVIGTPEFMAPEMYEEEYNELADVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGKLPMSFFRIEDTEARRFIGKCLEPAAKRPSAKDLLLEPFLLADDTSSEKKLAIQKPFLNDSEMEKLQLRDEFSRTQMKVIGKLNPEDDTIFLKVQISDKNCSVRNVYFPFDILTDTPIDVAMEMVKELEIYVWDPYDIANMINREISALVPHRWKNECSDSFHTFNYQDDDVDENRHHFRSISSSSSLQELIPDFVSKNEEIAHGYYLLHDDLHDDNSSRCSSQGTYSNWNYYSMDDYEHNAASIRKDHKLPIIKNHNKGTRFSPGEELNNCNQCRVSGGSQNPSPSKNKMMMENRKLTRNRSLIDTRSQLLHKSLVDELNKRRQFKTVGSVENIGFQSPYDDSTK 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03843 584 ProSiteProfiles Protein kinase domain profile. 20 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03843 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Trre10g03843 584 SUPERFAMILY Protein kinase-like (PK-like) 21 303 IPR011009 -
Trre10g03843 584 Pfam Protein kinase domain 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03843 584 Gene3D Transferase(Phosphotransferase) domain 1 103 284 - -
Trre10g03843 584 SMART serkin_6 20 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03843 584 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 557 - -
Trre10g03843 584 CDD STKc_WNK 18 278 - -
Trre10g03843 584 Gene3D Phosphorylase Kinase; domain 1 4 101 - -
Trre10g03843 584 FunFam probable serine/threonine-protein kinase WNK9 103 283 - -
Trre10g03843 584 FunFam Probable serine/threonine-protein kinase WNK1 5 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03843 Trre-Chr10 47729973 47733046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03843 10 584 MAP Kinase Kinase Kinase AT5G58350 57.168 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre10g03843 Pkinase 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03843 K08867 - gmx:100272203 915.22