Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03842 ATGTTTTGTAAGAGAGAAAACATGGAGGATTTCAAGGAAGAGAATTGTTATGTGGAAACTGACCCAACTGGTCGCTATGGCAGATTTGGAGATGTTCTTGGAAAAGGAGCAATGAAGACAGTATACAAAGCAATTGATGAGGTTCTTGGAATAGAGGTAGCATGGAACCAAGTTAGACTCAATGAAGTACTTAATACACCGGACGATTTGCAGCGCCTTTACTCGGAGGTTCATCTCCTAAGTACCCTCAAACACCGATCGATCATGCGATTCTACACATCTTGGATTGATATTGATAACAAGGCCTTCAACTTTATCACAGAAATGTTCACATCAGGATCACTTAGAGAATACCGGAAGAAATATAAACGAGTAAGCATACAAGCAATAAAGAGTTGGGCGCGCCAAATCTTACAAGGCCTAGTTTTTCTACATGGACATGATCCACCTGTTATTCATAGGGACCTAAAATGTGATAACATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTTGGATTAGCTGCAATTCTCCAAGGTTCTCAATCAGCTCATAGTGTTATAGGTACACCGGAGTTCATGGCACCGGAAATGTATGAAGAAGAATACAATGAACTTGCTGATGTGTACTCATTCGGCATGTGTGTATTAGAAATGCTCACATCTGATTATCCATACAGTGAATGTACTAATCCAGCACAAATTTACAAGAAAGTGACATCGGGAAAGCTACCGATGTCATTCTTCCGCATTGAAGACACCGAAGCGCGGAGGTTCATTGGTAAATGTTTAGAGCCTGCAGCAAAGAGACCGTCCGCGAAAGATTTGTTGCTTGAGCCCTTTCTTTTGGCCGATGATACGTCGTCAGAAAAGAAGTTAGCAATTCAGAAGCCATTTTTGAATGACAGTGAGATGGAAAAACTTCAATTGAGAGATGAATTTTCAAGAACTCAAATGAAAGTAATTGGAAAGTTGAATCCTGAAGATGATACTATCTTTCTCAAAGTGCAAATTTCTGATAAGAATTGTTCTGTTAGGAATGTATATTTTCCCTTCGATATTCTCACCGACACGCCAATTGATGTTGCTATGGAGATGGTAAAAGAATTGGAGATTTATGTTTGGGATCCTTATGATATTGCAAATATGATTAATAGAGAGATATCTGCTTTGGTACCACATAGATGGAAAAATGAATGTTCAGATTCCTTCCACACATTCAATTATCAAGATGATGATGTCGATGAAAATCGTCATCATTTCCGCTCAATCTCTTCTAGTTCATCGTTACAAGAATTGATACCGGATTTTGTCAGTAAAAACGAGGAAATAGCGCACGGATATTATTTGCTTCATGATGATTTACATGATGATAATAGTTCAAGATGCTCTTCACAAGGGACATACTCAAATTGGAACTACTATTCTATGGATGACTATGAACACAATGCAGCTTCAATCAGAAAAGATCATAAGCTTCCTATAATAAAGAATCACAATAAAGGCACAAGGTTTTCTCCTGGTGAAGAGTTGAACAATTGTAATCAGTGTAGAGTTTCAGGAGGATCACAGAATCCTTCACCTAGTAAAAATAAGATGATGATGGAAAACCGAAAACTGACACGGAATAGGTCACTGATCGATACGCGGAGTCAATTGTTACACAAATCACTTGTTGATGAGTTGAACAAAAGGAGGCAATTCAAGACAGTTGGTTCTGTGGAGAATATTGGATTTCAGTCACCTTATGATGATTCTACAAAATAG 1776 0.3823 MFCKRENMEDFKEENCYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEVLNTPDDLQRLYSEVHLLSTLKHRSIMRFYTSWIDIDNKAFNFITEMFTSGSLREYRKKYKRVSIQAIKSWARQILQGLVFLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILQGSQSAHSVIGTPEFMAPEMYEEEYNELADVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGKLPMSFFRIEDTEARRFIGKCLEPAAKRPSAKDLLLEPFLLADDTSSEKKLAIQKPFLNDSEMEKLQLRDEFSRTQMKVIGKLNPEDDTIFLKVQISDKNCSVRNVYFPFDILTDTPIDVAMEMVKELEIYVWDPYDIANMINREISALVPHRWKNECSDSFHTFNYQDDDVDENRHHFRSISSSSSLQELIPDFVSKNEEIAHGYYLLHDDLHDDNSSRCSSQGTYSNWNYYSMDDYEHNAASIRKDHKLPIIKNHNKGTRFSPGEELNNCNQCRVSGGSQNPSPSKNKMMMENRKLTRNRSLIDTRSQLLHKSLVDELNKRRQFKTVGSVENIGFQSPYDDSTK 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03842 591 Gene3D Transferase(Phosphotransferase) domain 1 110 291 - -
Trre10g03842 591 SUPERFAMILY Protein kinase-like (PK-like) 28 310 IPR011009 -
Trre10g03842 591 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Trre10g03842 591 CDD STKc_WNK 25 285 - -
Trre10g03842 591 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 564 - -
Trre10g03842 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Trre10g03842 591 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03842 591 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03842 591 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03842 591 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Trre10g03842 591 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03842 Trre-Chr10 47729973 47733067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03842 17 591 MAP Kinase Kinase Kinase AT5G58350 57.168 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre10g03842 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03842 K08867 - gmx:100272203 915.22