Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03836 ATGTCGGAGATTGAACAAGTTCCGCCAGCTACGGCGGAAACAACCACGTTATTCGAAAAATACGAGATCGGAAAACTTCTAGGATGCGGCGCGTTTGCGAAAGTGTATCACGCGCGGAATATGGAGAATGGACAAAGTGTTGCTGTGAAAGTAATCAACAAGAAGAAAGTTACAGCAACTGGTCTTGCTGGTAACGTGAAACGTGAAATCTCGATTATGAGTCGTCTTCGTCATCCTAATATTGTTAAGCTTCATGAAGTTCTTGCTACGAAAACTAAGATCTATTTTGTTATGGAGTTTGCTAAAGGTGGTGAGCTTTTTGCCAAGATTGCGAGTAAAGGAAGGTTCAGTGAAGATCTATCTAGGAAGCTTTTTCAACAGTTGATTTCTGCTGTTGGTTATTGTCATTCTCATGGTATTTTTCATCGTGATTTGAAACCGGAAAATCTTTTGCTTGATGATAAGGGGAATTTGAAGGTTTCGGACTTTGGATTGAGTGCGGTGAAAGAGCAAATTCGTGTGGATGGAATGTTACACACGCTTTGCGGAACGCCTGCTTACGTGGCACCGGAGATTTTGGCGAAGAGAGGTTATGATGGAGCTAAGGTGGATGTTTGGTCGTGTGGTATTATTCTCTTTGTTCTTGTGGCTGGTTATCTTCCATTTAACGATCCAAATTTGATGGTGATGTATAGGAAGATATATAGTGGAGAATTTAAGTGTCCGCGGTGGTTTTCACCGGATCTACGACAGTTTTTATCGCGGTTGTTGGATACAAAACCTGAGACGAGGATAACTGTTGAGGAGATTATAAGGGATCCTTGGTTTAGAAAAGGGTATAAGGAGGTGAAGTTTCATGAAGAGGGGGTTGGACTTGGGGAGAAGGTTAATGGGGAAGAAGAAAGTAAAACAATGGATTTGAATGCGTTTGATATTATTTCATTTTTCTCTTCAGGCTTGGATCTTTCAGGGTTGTTTACGAACGTAGAAGGGGAGAGATTCGTGTTGAGGGAGTCGTTGGAAAAGGTTGTTGAGAAGGTGGCGGCGGCAGCGAAGGCGGAGGAGCTAGTGGTGAGAAAGAAGAAGGAATTTGGAGTGGAGATTGAGACCCAAAACGGGGGTTTGATCATTGGGGTTGAGGTTTACCGGTTATTGGCTGAGGTGGTTGTGGTTGAGGTGAAAAGGTTTGGTGGGGACGAGGTTGCTTTCGAGGAAGTGTGGAAGAATAAGTTGAGACCCCACTTGTGTGATGCAACTACGTCGCAACAGGCCCAAACTCTGTCTCATGCAGCTGTCTCTGCTGAATAA 1308 0.4373 MSEIEQVPPATAETTTLFEKYEIGKLLGCGAFAKVYHARNMENGQSVAVKVINKKKVTATGLAGNVKREISIMSRLRHPNIVKLHEVLATKTKIYFVMEFAKGGELFAKIASKGRFSEDLSRKLFQQLISAVGYCHSHGIFHRDLKPENLLLDDKGNLKVSDFGLSAVKEQIRVDGMLHTLCGTPAYVAPEILAKRGYDGAKVDVWSCGIILFVLVAGYLPFNDPNLMVMYRKIYSGEFKCPRWFSPDLRQFLSRLLDTKPETRITVEEIIRDPWFRKGYKEVKFHEEGVGLGEKVNGEEESKTMDLNAFDIISFFSSGLDLSGLFTNVEGERFVLRESLEKVVEKVAAAAKAEELVVRKKKEFGVEIETQNGGLIIGVEVYRLLAEVVVVEVKRFGGDEVAFEEVWKNKLRPHLCDATTSQQAQTLSHAAVSAE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03836 435 Gene3D Kinase associated domain 1, KA1 308 419 - -
Trre10g03836 435 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Trre10g03836 435 SUPERFAMILY Protein kinase-like (PK-like) 18 285 IPR011009 -
Trre10g03836 435 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03836 435 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03836 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 15 399 - -
Trre10g03836 435 FunFam Non-specific serine/threonine protein kinase 11 308 - -
Trre10g03836 435 Pfam NAF domain 307 360 IPR004041 GO:0007165
Trre10g03836 435 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03836 435 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Trre10g03836 435 Gene3D Transferase(Phosphotransferase) domain 1 12 307 - -
Trre10g03836 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Trre10g03836 435 ProSiteProfiles NAF domain profile. 302 327 IPR018451 GO:0007165
Trre10g03836 435 CDD CIPK_C 308 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03836 Trre-Chr10 47625636 47627566 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03836 1 424 CBL-interacting serine-threonine protein kinases AT2G30360 62.385 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre10g03836 Pkinase 2.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03836 - - tcc:18591074 567.77