Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03833 ATGGAGAATACATCAAAAGTCTTGATGCAAAGATATGAATTAGGAAGATTACTTGGCCAAGGAACATTTGGAAAAGTTTACTATGGAAGAAGTACAATAACTAACCAAAGTGTAGCTATTAAAATGATTGACAAGGATAAGGTTTTAAAAAATGACCAAGTTGGTAGCATAAAAAGGGAAATATCGATCATGAGACTTGTAAAACATCCGAATATCATACAGCTTTTTGAGGTCATGGCAACAAAGAGTAAGATTTACTTTGTTATTGAATATGCTAAAGGCGGCGAGCTTTTCAAGAAAGTAGCAAAAGGAAAGCTCAGAGAAGATATTGCACACAAATATTTCAAGCAGTTAATTAGTGCAGTTGATTATTGTCACAGTAGAGGTGTATACCATAGAGACATAAAGCCGGAAAACATTCTATTAGATGAGAATGAGAATCTGAAAATATCAGATTTTGGTTTAAGTGCTTTGACTGAATCGAAAAGGCAAGACGGATTGTTACATACAACTTGTGGAACACCTGCTTATGTTGCTCCTGAAGTCATCAAAAGGAAGGGTTATGATGGTTCGAAAGCTGATATTTGGTCTTGTGGAGTTGTTCTTTTTGTTTTGCTTGCTGGTTATGTACCTTTCAATGACTCAAATTTGATGGATATGTATAGGAAGATAAGTAATGCAGATTTTAAGTGTCCTAATTGGTTTCCGAGAAATGTTAGGAAACTATTGTGTAAGATGTTGGATCCAAATCCTGACACTAGGATATGTATAGATAACATTAAACAATGTTCTTGGTTTAAGTATGGACCAAATGGTAGGAAGAAAAAACAAGAAATGGAAAACAATACTATCTCTTCTTTGGCTACAAACTCTGTAGCACCGACAGATCAGATTGAAGGCGTGTCGGTATCCAACACTGACACGATACCTACACATGTGACAGATGATTCTGATCAAAGGGATGAAACTGAAAAGCAAGAGTCGGTTGTGCCTGTGAGCATAAATGCCTTTGATATTATCTCTCTTTCAACTGGTTTTAATCTTTGTGGATTCTTTGAAGACAGTTTTAAGAAAAAGGAAGCAAGGTTTACTTCGAGACAACCCGCATCAATCATTATTTCGAGGATGGAAGAGATTGCAAAGAGGCTGAAGATGAAAATAAAGAAAAGGGCTGCTGGTTTGTTGAAATTAGAGGGAGTTGATGAAGGTAGAAAAGGAATATTGTGTATTGATGCTGAGATTTTCGAGGTTACTCCATTTTTTCATTTGGTTGAAGTAAAAAAATCAAATGGAGATACATTGGAATATCAGAAAATATTGAATGATGATATTAGGCCTGCTCTTCAAGATATTGTTTGGGTTTGGCAAGGTGAATTACAAGAACAATCTCAACAATCAGAGCAGCAGTAG 1410 0.356 MENTSKVLMQRYELGRLLGQGTFGKVYYGRSTITNQSVAIKMIDKDKVLKNDQVGSIKREISIMRLVKHPNIIQLFEVMATKSKIYFVIEYAKGGELFKKVAKGKLREDIAHKYFKQLISAVDYCHSRGVYHRDIKPENILLDENENLKISDFGLSALTESKRQDGLLHTTCGTPAYVAPEVIKRKGYDGSKADIWSCGVVLFVLLAGYVPFNDSNLMDMYRKISNADFKCPNWFPRNVRKLLCKMLDPNPDTRICIDNIKQCSWFKYGPNGRKKKQEMENNTISSLATNSVAPTDQIEGVSVSNTDTIPTHVTDDSDQRDETEKQESVVPVSINAFDIISLSTGFNLCGFFEDSFKKKEARFTSRQPASIIISRMEEIAKRLKMKIKKRAAGLLKLEGVDEGRKGILCIDAEIFEVTPFFHLVEVKKSNGDTLEYQKILNDDIRPALQDIVWVWQGELQEQSQQSEQQ 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03833 469 FunFam Non-specific serine/threonine protein kinase 5 304 - -
Trre10g03833 469 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03833 469 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03833 469 ProSiteProfiles NAF domain profile. 329 353 IPR018451 GO:0007165
Trre10g03833 469 Pfam NAF domain 331 389 IPR004041 GO:0007165
Trre10g03833 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Trre10g03833 469 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03833 469 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Trre10g03833 469 MobiDBLite consensus disorder prediction 313 327 - -
Trre10g03833 469 FunFam Non-specific serine/threonine protein kinase 329 453 - -
Trre10g03833 469 MobiDBLite consensus disorder prediction 301 327 - -
Trre10g03833 469 CDD CIPK_C 335 449 - -
Trre10g03833 469 Gene3D Transferase(Phosphotransferase) domain 1 2 332 - -
Trre10g03833 469 Gene3D Kinase associated domain 1, KA1 333 454 - -
Trre10g03833 469 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 448 - -
Trre10g03833 469 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Trre10g03833 469 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03833 Trre-Chr10 47590141 47591550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03833 1 461 CBL-interacting serine-threonine protein kinases AT5G58380 65.293 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre10g03833 Pkinase 5.9e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03833 - K07198 gmx:100779316 714.916