Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03828 ATGTTTGGATCTGCAAAGACAGAAAGACTAGATGAAATAGCAAAAATCAATTCAGAGGGAGAAACATCATCTCAAATGGGAAGGAAGCATTTTCATGGTCAAATTATTGGAACAACCTTAAACACAGTAACTCCTTGTGCTGCATCTGTTCATAAAGTGTTTGGTGCTAGCAATGTCTCCAAATTGCTATTGGAGGTACCTGAAGGACAAAGAGCTGATGCTGCAAATAGTATGGTTTATGAAGCTAATTTGAGGTTAAGAGATCCTGTTTATGGATGCATGGGTGCAATATCAACATTACAACAACAAGTTCAATCTTTACAAGCAGAACTTCATGCAATTAGAGCTGAAATACTAAAATACAAATATAGAGAAGCAGCTTCTTTTATTTCATCTCAAGTATCAATCCCTACAAATGCAAACTCACAAGCTCTTTCTCAACCTCTTATTCTTCCTACTTTAGCTCCTCCATCTCCTTCTCTTCCTCCACCACAAAAAGTATTACCTTCTCAATCGATTATCCTTTCGTCGTTGTCGTCGTCTTCGGCTTCCTCGGTCTACACTCCATCTAAGAGTACAATGAGTCATGGATCTATTTCTAGTGAAAATAATATTCCATATTTTGTTTAG 630 0.3714 MFGSAKTERLDEIAKINSEGETSSQMGRKHFHGQIIGTTLNTVTPCAASVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISTLQQQVQSLQAELHAIRAEILKYKYREAASFISSQVSIPTNANSQALSQPLILPTLAPPSPSLPPPQKVLPSQSIILSSLSSSSASSVYTPSKSTMSHGSISSENNIPYFV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03828 209 Coils Coil 97 117 - -
Trre10g03828 209 Pfam Lateral organ boundaries (LOB) domain 48 114 IPR004883 -
Trre10g03828 209 ProSiteProfiles LOB domain profile. 18 118 IPR004883 -
Trre10g03828 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 48 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03828 Trre-Chr10 47558492 47559981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03828 37 133 AS2 family AT2G30340 58.871 4.62e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre10g03828 LOB 4.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03828 - - ccaj:109795340 239.58