Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre10g03801 | ATGCTTTCAGGGGACATACCTCCAAATCAAACCATTTACATTAAGAATCTCAATGAAAAGATCAAGAAAGACGAGTTGAAGAGATCTTTGTACTGCTTATTCTCTCAATATGGGAGGATTTTGGACATTATTGCTCTAAAGACACCTAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTAACCGCTGCCAGTAATGCTGTGCGACAGATGCAAAACTTCCCGTTTTACGAAAAACCTATGAGAATTCAATATGCAAAATCAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGTTTTGTTCCAAGAGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAGAGAAAGAGGAATGATGAATCAAAACAATCTGCCGTGCCTAATGGAACACATGGTGCAAGTAATGGTGGTCCAACAGCCTCATTTCGCCCAGGGTCTAATGCCCAAGAAGCAGTTGCTCCTAACAATATTTTATTCATAGAGAATTTGCCTTATGAAACTACCGGCAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGCTTGATCGATGCAAAGCCAGGTATCGCGTTCGTAGATTTTGAAGACGATGTACAATCATCCATGGCAATGCAGGCTCTTCAAGGATTCAAAATCACCCCTCAAAATCCCATGAGTATAAACTTTGCTAAGAAGTAA | 696 | 0.4023 | MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKSKSDCIAKEEGSFVPREKKKKQEEKAERKRNDESKQSAVPNGTHGASNGGPTASFRPGSNAQEAVAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIDAKPGIAFVDFEDDVQSSMAMQALQGFKITPQNPMSINFAKK | 231 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre10g03801 | 231 | PANTHER | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B | 9 | 90 | - | - | |
Trre10g03801 | 231 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 218 | IPR035979 | GO:0003676 | |
Trre10g03801 | 231 | CDD | RRM1_U1A_like | 11 | 88 | - | - | |
Trre10g03801 | 231 | MobiDBLite | consensus disorder prediction | 99 | 123 | - | - | |
Trre10g03801 | 231 | Coils | Coil | 104 | 124 | - | - | |
Trre10g03801 | 231 | Gene3D | - | 146 | 231 | IPR012677 | - | |
Trre10g03801 | 231 | SMART | rrm1_1 | 158 | 227 | IPR000504 | GO:0003723 | |
Trre10g03801 | 231 | SMART | rrm1_1 | 11 | 85 | IPR000504 | GO:0003723 | |
Trre10g03801 | 231 | MobiDBLite | consensus disorder prediction | 99 | 148 | - | - | |
Trre10g03801 | 231 | Gene3D | - | 4 | 118 | IPR012677 | - | |
Trre10g03801 | 231 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 89 | IPR000504 | GO:0003723 | |
Trre10g03801 | 231 | FunFam | U1 small nuclear ribonucleoprotein A | 4 | 109 | - | - | |
Trre10g03801 | 231 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 157 | 231 | IPR000504 | GO:0003723 | |
Trre10g03801 | 231 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 159 | 218 | IPR000504 | GO:0003723 | |
Trre10g03801 | 231 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 12 | 81 | IPR000504 | GO:0003723 | |
Trre10g03801 | 231 | CDD | RRM2_U1A_like | 155 | 226 | - | - | |
Trre10g03801 | 231 | FunFam | U2 small nuclear ribonucleoprotein B'' | 148 | 231 | - | - | |
Trre10g03801 | 231 | MobiDBLite | consensus disorder prediction | 124 | 148 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre10g03801 | Trre-Chr10 | 47311322 | 47315951 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre10g03801 | 3 | 231 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 22.979 | 6.41e-08 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre10g03801 | K11094 | - | gmx:100805822 | 412.149 |