Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03800 ATGACATCTTCATCAAGTAGTTTACAAAACCATAACAATAACAATTCTTTGAACAATTTTACCTTCTCATCACACCCTTTTATCACTACTTCTTTTTCTGACCTTTTAGCTTCTACTATTGAAGAGAAATCAAGTGGTGAAAGAAATGGTTATGGTGGTGGTGGAAATGGTGGGGGTGTGCCAAAATTTAAGTCTACACCCCCTCCTTCTTTGCCTTTGTCACCTCCACCTGCTTCTCCTTCTTCTTACTTTTCTATTCCTCCTGGTTTGAGTCCTGCTGACTTACTTGATTCACCTGTTTTGCTTAACTCTTCCAATATTTTGCCATCTCCTACAACTGGTTCTTTTGCTTCTCAAAGGTACAATTGGTTGAACAGTTCTGAAGAGAATCAGCAAATTGCAAATGAAACTGACAAAAGCTTCTCAAATTTCTCTTTTCATAACCAACAAGGACCTGCTGTTACTGGATCCAACACTACTTTTCAATCATCAACAGTAGTTGGAGTTGAACAGCAACAACCATGGAGTTATCAAGAAAACACAAATCAGAATGTTTTTTCACCTGAAACCAATTTGATCCAAGCTGAAAACAACAACACTTCAATGCAGAGTTTTTCTCCTGAGATTCCTAATGTTCAAACCATCACAATCAACAATGGATTCCAATCAGATCATAACACTAATTACGCAATCTTAAGCAGAAGATCAGATGATGGATACAATTGGCGAAAATATGGACAAAAACAAGTGAGAGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACTTATCCTAATTGTCCTACAAAGAAGAAAGTTGAGAGATCAATTGAAGGACAAATTACTGAGATAGTTTATAAGGGAAATCATAATCATCCTAAGCCTCAAGTTGGTGTTAGGAGAAACTCGTCATCATCGTCTTCTAATTCTCTTGTGATTGCTCCTGTTAATCCAAATGCTACTGAAATCCATGATCATTCATATGGTTCACATGGTAATGGACAAATGGATTCGGTCGCTACTCCTGAGAATTCGTCAATATCAATAGGAGGTGATGACGATTTTGAGCAGAGTTCTCTTCAGAGGTCTAGATCTGTTGGTGCTGATGAAGTTGTTGAAGAGGAACCTGAACCTAAAAGATGGAGAAATGAAGTTGAAAATGAGGGTATAGTCCTTGGACACAGAACAGTGAGAGAACCTAGAGTTGTTGTTCAGACAACAAGTGACATTGATATCCTGGATGATGGTTACAAATGGAGGAAATATGGACAGAAAGTTGTTAAGGGCAATCCAAATCCAAGGAGTTACTACAAATGTACACACCCCGGTTGTCCTGTAAGAAAACATGTTGAACGTGCCGCGCATGATATAAAGGCAGTGATCACAACCTATGAAGGAAAACACACACACGATGTTCCTGCAGCTCGTGGAAGTGGAAGCAATTCTATGAACAGACCAACTCCAAACAGCCCTTTAAATCAATCCAATGCTCCCTATGCTATAAGGCCTTTACAGATGCAACTGCCGCAAGGGCAAGTACGTCCTTTCCATCCTGATTTGCTGCTTGGTCAAGGAAGTTATGGTATCTCAGGATTTAGGAATCAAATGATGCCTTACATGAATCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAACACATTTCTGAAAATGGTTTTTCCTCATTGTGCTGA 1710 0.3924 MTSSSSSLQNHNNNNSLNNFTFSSHPFITTSFSDLLASTIEEKSSGERNGYGGGGNGGGVPKFKSTPPPSLPLSPPPASPSSYFSIPPGLSPADLLDSPVLLNSSNILPSPTTGSFASQRYNWLNSSEENQQIANETDKSFSNFSFHNQQGPAVTGSNTTFQSSTVVGVEQQQPWSYQENTNQNVFSPETNLIQAENNNTSMQSFSPEIPNVQTITINNGFQSDHNTNYAILSRRSDDGYNWRKYGQKQVRGSENPRSYYKCTYPNCPTKKKVERSIEGQITEIVYKGNHNHPKPQVGVRRNSSSSSSNSLVIAPVNPNATEIHDHSYGSHGNGQMDSVATPENSSISIGGDDDFEQSSLQRSRSVGADEVVEEEPEPKRWRNEVENEGIVLGHRTVREPRVVVQTTSDIDILDDGYKWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERAAHDIKAVITTYEGKHTHDVPAARGSGSNSMNRPTPNSPLNQSNAPYAIRPLQMQLPQGQVRPFHPDLLLGQGSYGISGFRNQMMPYMNHHHHHHQQQQQQQQQQQHISENGFSSLC 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03800 569 MobiDBLite consensus disorder prediction 475 496 - -
Trre10g03800 569 MobiDBLite consensus disorder prediction 43 85 - -
Trre10g03800 569 Pfam WRKY DNA -binding domain 237 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03800 569 Pfam WRKY DNA -binding domain 414 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03800 569 MobiDBLite consensus disorder prediction 296 316 - -
Trre10g03800 569 Gene3D WRKY domain 400 466 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g03800 569 ProSiteProfiles WRKY domain profile. 237 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03800 569 MobiDBLite consensus disorder prediction 65 83 - -
Trre10g03800 569 ProSiteProfiles WRKY domain profile. 408 473 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03800 569 FunFam WRKY transcription factor 224 296 - -
Trre10g03800 569 SUPERFAMILY WRKY DNA-binding domain 235 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g03800 569 Gene3D WRKY domain 224 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g03800 569 FunFam WRKY transcription factor 33 400 466 - -
Trre10g03800 569 SUPERFAMILY WRKY DNA-binding domain 405 473 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g03800 569 MobiDBLite consensus disorder prediction 550 569 - -
Trre10g03800 569 MobiDBLite consensus disorder prediction 323 365 - -
Trre10g03800 569 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 96 552 IPR044810 GO:0003700
Trre10g03800 569 MobiDBLite consensus disorder prediction 286 380 - -
Trre10g03800 569 MobiDBLite consensus disorder prediction 464 496 - -
Trre10g03800 569 MobiDBLite consensus disorder prediction 542 569 - -
Trre10g03800 569 SMART WRKY_cls 413 472 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03800 569 SMART WRKY_cls 236 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03800 Trre-Chr10 47290662 47294252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03800 60 506 WRKY Transcription Factor Family AT2G38470 49.227 5.47e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre10g03800 WRKY 3.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03800 K13424 - gmx:100127385 667.537