Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03790 ATGACATCTATGCTCAACCAAATTTTGAGATTGATTAAGCAGCCAAAGGTTAACGGAAAACCAGATGTGTATAATATGGTTTCTGGTTCTGCTTTTGCTTTCATGTCACTCGATCGACGCGTACAACAAGATCAAGATTCCGCACTCGTTATTCAGATCCCAGAAGATGGTTCAGAAGAATTAACCAATACTAGTGCTAATGAATATGCTATTCCGGTGGATGCCTCTCAAGTCAATTCTGATAGAGTTGCCCTGCCGGAAAACAATGATCTCGGACTTCAAATCAGTTCGCCTTCACAACAAAATGAGGGGATATCAGTACCTAGAAGCAGAACAGTGAGAGAACCTGGAGTTGTTGTTCAGACAATAAGTGACATTGATATTCTGGATGATGGTTACAAATGGAGGAAATATGGTCAGAAACTTATCCAGGGAAATCTATATCCAAGGAGTTACTACAGATGTGAACTCAAACATCGAGGAGGTTGTCTTGCGACAAAGCAAGTTGAACGTTCCTCAGACAATATAAGGGTTGTGAACACAACATATAGGGGGACACACAACCATGATGTTCCCCCGCAGCTCGTGGAAGTGGAAGCAATTCAGTGA 609 0.4187 MTSMLNQILRLIKQPKVNGKPDVYNMVSGSAFAFMSLDRRVQQDQDSALVIQIPEDGSEELTNTSANEYAIPVDASQVNSDRVALPENNDLGLQISSPSQQNEGISVPRSRTVREPGVVVQTISDIDILDDGYKWRKYGQKLIQGNLYPRSYYRCELKHRGGCLATKQVERSSDNIRVVNTTYRGTHNHDVPPQLVEVEAIQ 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03790 202 SUPERFAMILY WRKY DNA-binding domain 121 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g03790 202 Gene3D WRKY domain 114 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g03790 202 SMART WRKY_cls 129 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03790 202 Pfam WRKY DNA -binding domain 130 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03790 202 ProSiteProfiles WRKY domain profile. 124 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03790 202 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 193 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03790 Trre-Chr10 47243973 47245464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03790 101 195 WRKY Transcription Factor Family AT2G30250 57.895 4.18e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre10g03790 WRKY 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03790 K13424 - cpap:110823719 132.494