Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03785 ATGAATGAGCTTAAGAAAAACAATTTGAATATCAGTAAGATGCTTTTGCAGAAAGTGAAAGGTAACTATAAATTGTTTGTGACGGATCACAACTTCATAATTGATGCACTTTTGCCCGAAACAATCAATAACCTTCATGAAACGGCGAAATTGATGATTGATGCTGGATTTGAGAGAGAGTGCTATGAGATTTACAATAGTTATCGCGAGGAATGGTTGGAAGACTTGTTAATAAATAAGTTATTATCATTGAGAAAGATGGGATTTCAGGATTACGTGATTGGAAGATGGATTAAAACTTCTAAGGTTGCTCTTAAAATACTATTTCCGAGTGAGCGTCAACTATACGACCGTGTCTTCTCAGAATCCAACTTGTCTAATCTCTATTTCTCGAGGACTTGTAGTGGAGCGATGATTCAGCTGCTGAATTTTTCTGTTGCGTTTGCAAATAGAAGCCCTTCAGCGTGGCGTTTGTTTAAAATCCTCAACTTGTTTGAGACGTTGTCTGATTTGATTCATGACTTTGAATCGTTATTTCTTGATCGGTTGGTGAGTGAAGCAATACAAGTCAAGAACAGATTGGGTGAAAAAATTAGAGACATTTTCTTGGAATTTGGGAATCTGATCTTCCTTACACCGGACGCGGAGTTAGATTGTTGGGCTGATGGAGGGGTGCATCCAATGACCTGTGAGGCCACTGGTTACATCGTTATGGCTTTCTGGTCAAGACAAAGCCTTGAGAAAGTTTTACGAGAATACCCCTTGGTTGTTGATGGAGTAAAAACGTATTCTTTATTCTATTCGCAAGTGGAGCTTATAATGGAGCAGTTTGAGAAAAAATTGGAAGCTAAGTCACAAATTTACGAGGAACCTACTTTGCGTTACTTTTTCGTTATGAATAATCTAGCTCACATTGAGTACAAATTGGAAACCTTTTGGGATCTAAAGTACACAGGGCAATACTTTGAACTCTATTGTAGAAACTCATGGAGCAAGGTGATAGATTTTTTGAAGATGGATATGAATGAGTCAGTTACGTCTAATTTTGAAGCAAATTCAATGAAAGACAATCTTAGTTTGTTCAATCAGAAGTTTAAGGAGACGTGTGGAATTCAGTGTACATGGCGTGTTTTTGACGAGAAACTAAGGAAACAAATAATAGCTTTCCTCGAAATCAAGTTGTTGCCATCATATGAAAACTTCATTGCTATTTTTCAGAATGTTGTTGGTCAAAATGCAGACGAGTATATCGTGTATGAAATGCCTGACATTCAAGATCAACTCAATCATTTGTTTCTGTTAGAAGAAGTTGATTGTGTTAGAGAGGACTTGATGAAAACCAATAAGCTAGCTATCTAG 1359 0.3701 MNELKKNNLNISKMLLQKVKGNYKLFVTDHNFIIDALLPETINNLHETAKLMIDAGFERECYEIYNSYREEWLEDLLINKLLSLRKMGFQDYVIGRWIKTSKVALKILFPSERQLYDRVFSESNLSNLYFSRTCSGAMIQLLNFSVAFANRSPSAWRLFKILNLFETLSDLIHDFESLFLDRLVSEAIQVKNRLGEKIRDIFLEFGNLIFLTPDAELDCWADGGVHPMTCEATGYIVMAFWSRQSLEKVLREYPLVVDGVKTYSLFYSQVELIMEQFEKKLEAKSQIYEEPTLRYFFVMNNLAHIEYKLETFWDLKYTGQYFELYCRNSWSKVIDFLKMDMNESVTSNFEANSMKDNLSLFNQKFKETCGIQCTWRVFDEKLRKQIIAFLEIKLLPSYENFIAIFQNVVGQNADEYIVYEMPDIQDQLNHLFLLEEVDCVREDLMKTNKLAI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03785 452 Pfam Exo70 exocyst complex subunit 96 429 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre10g03785 452 SUPERFAMILY Cullin repeat-like 25 432 IPR016159 -
Trre10g03785 452 Gene3D Exocyst complex component Exo70 2 437 - -
Trre10g03785 452 PANTHER EXOCYST COMPLEX PROTEIN EXO70 32 432 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03785 Trre-Chr10 47230064 47231422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03785 27 432 EXO70 exocyst subunit family AT5G58430 42.494 1.16e-94 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03785 K07195 - psat:127118474 597.045