Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03783 ATGTCATATGGTTGCATGCCATATAAGCCAGTACCCCTTCCGCAACTTCTTAGTAATGGCCACACCGCTCAAGCACTCAAACAAAACAAAGAGATCTGGAGGAAAGTCGAAACAAACCAAGCCAGCAGAAAACACCAAACCAGACTGCAGCCGCAAAATAAAAGTGAGGAAATAAATGGAAAGATGATTCCACCTGAAACCATTGACAACCTTACAAAACTAGCGATGTTGATGATTAGCACCGGGTTTGAAAGGGAATTCTATGACATGTATAGCCATTACCGGAGGGAATGCTTGGTTGAAAGCCTCTCAAGATTATGGTTCCAGAAACTCAGCATTGAAGGCCTTCAGATGTTGTCATGGAAGGAAATGGAATACAATATTAAAAGATGGATTAAAGCTTCCAAAGTAGCATTGAAGATATTGTTCCCCACTGAACGGAGACTCTGCGATCAGGTTTTCTTTGGATTCTCCACCACCGCTGATTTATCCTTCGTGGATGTTTGCATGGAATCCACACTTCAGCTGCTGAGTTTCGCAAAAGCTATGGCCATCGTTAGACGATCACCTGAACCTGAACGGTTGTTTAGATTCCTAGACATGTTTGAAACTATGCATGACCTAATTCCAGAGTTTAAGTCTTTGTTCCGTGATCAGTACAGTGGGTCGCTGCAAAACGAAGCAGCCACAATTTTGAAGAGATTAGGGGAAGCAATCAAAGGCATTTTCATGGAGATGGAGAATCTGATTCGCTATGATGCGGCCCAATCGGCTGTTCCCTTTGGTGGGATTCATCCAATTACGCGTTATGTGATGAACTACCTTCGCGCCGCAAGTAGGTCACGGCAGACATTGGAGCAAGTGTTCGAGGATAGAGTGAATTCCTCTTTCTCTCTTTCAGTGCAGATGGGTTTGATTATGGAGCTATTGGACAGAAATTTGGAAGCCAAATCCAAAATCTACGAGGACCCTACTTTGTGCCATGTTTTCTTGATGAATAACTGCAGGTACATTGTTCTACATATCAAAGACAGTGAATTGGGAAGCATTTTAGGTAATGCTGTGATCCAAAAACACACAGCAAAAGTTCGGCAGCATCATGCGGACTATCAAAGAAACTCATGGAATAAGGTGTTGGAGTTTTTGACGTTGGACGGCAATGCATCAATGCAACCTAATGAGGAAGCAAATTCAATGAAGGAGAAGTTAAATTCATTCAACATGATCTTTGAGAAAATATGCAGGGTTCAATCTTCATGGTTTATCTTTGATAAACATCTTAAGAGAGAAATAATAACTTCCATTGTGAAAGTCTTGTTGCCAGCTTATGCAAAATTCATTAGAAGGTTTCAGAGAGTTCTTCAGCTTGGTAAGAATGCTGATAAATTTATTAAGTATGAAATGGAAGATATCGCAACGGGACTTGATGATTTGTTTCAGGGAAGTGGTAACTCCAATTAA 1461 0.4114 MSYGCMPYKPVPLPQLLSNGHTAQALKQNKEIWRKVETNQASRKHQTRLQPQNKSEEINGKMIPPETIDNLTKLAMLMISTGFEREFYDMYSHYRRECLVESLSRLWFQKLSIEGLQMLSWKEMEYNIKRWIKASKVALKILFPTERRLCDQVFFGFSTTADLSFVDVCMESTLQLLSFAKAMAIVRRSPEPERLFRFLDMFETMHDLIPEFKSLFRDQYSGSLQNEAATILKRLGEAIKGIFMEMENLIRYDAAQSAVPFGGIHPITRYVMNYLRAASRSRQTLEQVFEDRVNSSFSLSVQMGLIMELLDRNLEAKSKIYEDPTLCHVFLMNNCRYIVLHIKDSELGSILGNAVIQKHTAKVRQHHADYQRNSWNKVLEFLTLDGNASMQPNEEANSMKEKLNSFNMIFEKICRVQSSWFIFDKHLKREIITSIVKVLLPAYAKFIRRFQRVLQLGKNADKFIKYEMEDIATGLDDLFQGSGNSN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03783 486 Pfam Exo70 exocyst complex subunit 129 476 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre10g03783 486 MobiDBLite consensus disorder prediction 38 62 - -
Trre10g03783 486 SUPERFAMILY Cullin repeat-like 55 479 IPR016159 -
Trre10g03783 486 PANTHER EXOCYST COMPLEX PROTEIN EXO70 44 481 IPR004140 GO:0000145|GO:0006887
Trre10g03783 486 MobiDBLite consensus disorder prediction 43 57 - -
Trre10g03783 486 Gene3D Exocyst complex component Exo70 17 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03783 Trre-Chr10 47225536 47226996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03783 63 482 EXO70 exocyst subunit family AT5G58430 58.019 1.18e-168 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03783 K07195 - gmx:100803694 511.531