Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03758 ATGGCTACAGAAGCAAGAGCGAAGTTCCAAAACCCAGATTTCCGACCCGATTTCCAAACCCTAACGCCGTCAACTCACGACGGTCTTCACTTCTGGCAGTTCATGATTGCCGGATCCATCGCCGGTTGCATAGAACACATGGCAATGTTTCCCGTTGATACCGTTAAAACTCATATGCAAGCAATCACATCATGTCCAATTCAATCCGTTTCAGTTCGTCAAGCTTTACGTTCAATTCTAAAATCGGAAGGTCCCTCGGCTTTATACCGCGGTATTGGTGCAATGGGGCTCGGCGCGGGCCCGGCACACGCCGTATATTTTTCGGTTTATGAGACTTGTAAAAAAAAGTTCTCACAAGGGAACCCTAATAATGCTGTTGCTCATGCTGCTTCTGGTGTTTGCGCCACGGTTGCGAGTGACGCAGTTTTTACGCCGATGGATATGGTGAAACAGAGGTTGCAGTTGAGTAATAGTGGTTATAAAGGTGTTTTAGATTGTGTCAAGAGGGTTATGAGTGAGGAAGGGTTTGGTGCTTTTTATGCATCTTATAGGACTACTGTTTTGATGAATGCGCCTTTTACGGCTGTGCATTTCGCGACTTATGAGGCAGTGAAACGGGGGTTGAATGAGGTTTCTCCGGAGAGTGTTGATGATGATCGGTTGATTGTTCATGCTACGGCTGGTGCTGCGGCCGGTGGTTTGGCTGCTGCTGTTACAACACCACTTGATGTTGTTAAAACTCAACTGCAATGTCAGGGTGTATGTGGATGCGATAGGTTCAAAAGTGGTTCAATCGGTGATGTTATTAAAACAATAGTGAAAAAGGATGGATACAAAGGGCTCATGCGAGGATGGGTTCCAAGGATGCTCTTTCATGCTCCTGCAGCCGCTATTTGCTGGTCTACATATGAAGCTGGAAAATCTTTTTTCCAAGATTACAATGAGCAGAAAGATACCGGAACCATCACCTAA 972 0.4588 MATEARAKFQNPDFRPDFQTLTPSTHDGLHFWQFMIAGSIAGCIEHMAMFPVDTVKTHMQAITSCPIQSVSVRQALRSILKSEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKKKFSQGNPNNAVAHAASGVCATVASDAVFTPMDMVKQRLQLSNSGYKGVLDCVKRVMSEEGFGAFYASYRTTVLMNAPFTAVHFATYEAVKRGLNEVSPESVDDDRLIVHATAGAAAGGLAAAVTTPLDVVKTQLQCQGVCGCDRFKSGSIGDVIKTIVKKDGYKGLMRGWVPRMLFHAPAAAICWSTYEAGKSFFQDYNEQKDTGTIT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03758 323 PANTHER MITOFERRIN-1-RELATED 24 312 - -
Trre10g03758 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 207 IPR018108 -
Trre10g03758 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 116 IPR018108 -
Trre10g03758 323 SUPERFAMILY Mitochondrial carrier 27 304 IPR023395 -
Trre10g03758 323 Gene3D Mitochondrial carrier domain 12 159 IPR023395 -
Trre10g03758 323 Pfam Mitochondrial carrier protein 220 313 IPR018108 -
Trre10g03758 323 Pfam Mitochondrial carrier protein 29 119 IPR018108 -
Trre10g03758 323 Pfam Mitochondrial carrier protein 124 210 IPR018108 -
Trre10g03758 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 309 IPR018108 -
Trre10g03758 323 FunFam Mitochondrial carrier protein, expressed 124 318 - -
Trre10g03758 323 PRINTS Mitochondrial carrier protein signature 180 198 IPR002067 GO:0055085
Trre10g03758 323 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Trre10g03758 323 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Trre10g03758 323 PRINTS Mitochondrial carrier protein signature 228 250 IPR002067 GO:0055085
Trre10g03758 323 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Trre10g03758 323 Gene3D Mitochondrial carrier domain 160 323 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03758 Trre-Chr10 46967507 46970435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03758 1 319 Chloroplast and Mitochondria Gene Families AT1G07030 73.394 8.84e-169 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03758 K15113 - gmx:100802640 588.571