Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03750 ATGAGATACACTTCATCCCTTAGAAGTCCAAAGAAAGAAGAGCATGAAGTACCACAAATTATCACTCCAACACTACCAAACTTCAACAAGTCTTACACTCATGAAGATTTCTATATTTTCGACGAACTCGAAGAGTACTTGAACGAAGAAGAAGACGAACAAAAGTTATCGCCACAAAACACTTGTAATAGTAGTAATGAGCTTCATTGGGATTTAATGGAATGGGAGGAATTTTCCTTTGTTGAAGGGAAAGATGAGAACATAAGCAAATGCAATTTTGATGAGAAAAAGGTTATAAAGAGAGAAAATTACAATGATGGATTTTGGGAAGTGGATGATGAAAAGAGTGTGTCTTTGAATTTGAATTTGAACTATCAAGAAGTTTTGGATGCATGGTCTGACCGTGGTTCTCTATGGGCTGATGATTGTTCTCTTAATTCATTGTCCTCCTCCAATAATTGCTCCTATATGGGAGAAGTGCCAATATTGGAAGAAGAAAGAGCAAGAAGAGAAGCAAGTGTTCTTAGGTACAAAGAAAAACGTCAGAACAGATTGTTTTCCAAGAAGATAAGATACCAAGTTCGAAAATTAAACGCTGATAAAAGACCAAGAATCAAGGGACGCTTTGTGAAGAGACACTAA 642 0.3629 MRYTSSLRSPKKEEHEVPQIITPTLPNFNKSYTHEDFYIFDELEEYLNEEEDEQKLSPQNTCNSSNELHWDLMEWEEFSFVEGKDENISKCNFDEKKVIKRENYNDGFWEVDDEKSVSLNLNLNYQEVLDAWSDRGSLWADDCSLNSLSSSNNCSYMGEVPILEEERARREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKGRFVKRH 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03750 213 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 45 212 - -
Trre10g03750 213 Pfam CCT motif 170 212 IPR010402 GO:0005515
Trre10g03750 213 ProSiteProfiles CCT domain profile. 170 212 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03750 Trre-Chr10 46932260 46933955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03750 89 212 C2C2-CO-like Transcription Factor Family AT1G73870 41.844 5.89e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g03750 CCT 2.1e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03750 - - cam:101495184 283.493