Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03741 ATGGCAACAACACTAGAGTGTTGGTCAAGCCGCACCACCACCACAACAACCACCACCAATGACGACACAGTTGAACAACAACAAGTTCTCATGAGATCACACCACAGATCCGAACTTTCTTCTTCCATTACTTCTCTTTCTCTTCCTTCCAAAGACTCATCATCAATTCTACTTCACAACAAGAACAAGTTTCATAAACTCAGTCGCAATTTCTCTGATGCTATTACTTCTTTCAAAAACACTCTCAATTTCAACAATAATAATAACAATACTGAATCTTTTCCTTCTTCTAAGAAACTTGCTTGGGCTTCTGTTCTTCGTAATCTTACTCAACTTTACCCTGGAACTCAATTACCTGATAACCTTATATCTACCATTCGTAATCATTATCATTCTCTTCCTCTCAGTTATGCACAGGCAGAATTTGATATGAAGGATGTGTTTCTTCACATCAAGTTGATGGATCAGGCAATGGAAAGTGATCAGCCTGCGATTTTGATTCAACAACAGTGTGGTGACGGCGAGATTCAGGTTCAAGGGTCTGTATTGAAGCTCACTTTTGCTTGCAATTCTCTTATTTCATGGTCTGCTATGTCGGTTGCGTTGGACAGTTTCTCCATTTGTAGCAAGAGACCACAGATATTTGAGAAGAAAGGTTTCACCTTAGGGGTTGTTCTTCTCGTTGTTAGGTCCGGGCATGAAAAATTGGTCAAGACCCGAGTTGAGAATGCTTTGAAGTTTGCTTTAAAGAAGCCTAAAAACAATGCTGTGAATGTAAAGCTTTCATTTGGACTTTGTGGGTGTCAGGAAGAGAGTTTCAAGGGGAGAGAACTAGGGGAGATTGGAGAAGATAGTGGTAGCGGAAAGGAGTTTGAGAATTCTAACCAAAAGATTCAGCTTCAAATGCCTTTGCCTACCTCATCTTTCATTGTATCGGTAGATGAATGGCAGACGATAAAGTCAGGTGGCGATCAGATTGCAAAATGGTTGTTAAATGCAGATAGTGTTGAGTTTACAGAACAGATTGGACCCAATTATTATAAAGGAGTCTACATGGGGAAAAGGGTCGGAATTGAGAAGCTGAAAGGGTGTGAAAAAGGAAATTCTTACGAGTTTGAGCTCCACAGAGATCTTCTAGAACTGATGACTTGTGGACATAGAAACATTCTGCAGTTCTGTGGTATTTGTGTGGATGATAATCATGGGTTATGTGTGGTGACTAAGTTCATGGTACGTGGGTCGGTCCATGACCTAATGCTAAAGAACAAGAAGCTTCAGAGTAAGGATATTGTTAGAATCGCAGTTGATGTAGCTGAGGGGATCAAGTTTATGAATGACCATGGTGTTGCATATAGAGACCTTAATACGCAGAGGATTCTATTAGATAGGCACGGGAATGCTTGCTTGGGAGATATGGGTGTAGTCACTGCCTGCAAGGGTGTTGGTGAAGCAACGGAGTATGAAACCGATGGTTATAGGTGGCTAGCTCCTGAGATAATTGCAGGAGACCCCGAGAGCGTGATAGAGACATCTATGAGCAACATTTATAGTTATGGGATGATAATTTGGGAGATGGTAACTGGTGAGGCTGCATATTCTACCCTTTCTCCTGTGCAGGCTGCCGTTGGTATTGCTGCTTGTGGTCTTAGACCTGAAATTCCCAAGGACTGCCAACCTAATCTAAGATATATTATGACAAAATGCTGGAACAACACCCCTTCCAAACGTCCGAAGTTCTCCGATATTTTAGCCATATTGCTGCAACCATACAACAACAATAGGTAA 1785 0.4146 MATTLECWSSRTTTTTTTTNDDTVEQQQVLMRSHHRSELSSSITSLSLPSKDSSSILLHNKNKFHKLSRNFSDAITSFKNTLNFNNNNNNTESFPSSKKLAWASVLRNLTQLYPGTQLPDNLISTIRNHYHSLPLSYAQAEFDMKDVFLHIKLMDQAMESDQPAILIQQQCGDGEIQVQGSVLKLTFACNSLISWSAMSVALDSFSICSKRPQIFEKKGFTLGVVLLVVRSGHEKLVKTRVENALKFALKKPKNNAVNVKLSFGLCGCQEESFKGRELGEIGEDSGSGKEFENSNQKIQLQMPLPTSSFIVSVDEWQTIKSGGDQIAKWLLNADSVEFTEQIGPNYYKGVYMGKRVGIEKLKGCEKGNSYEFELHRDLLELMTCGHRNILQFCGICVDDNHGLCVVTKFMVRGSVHDLMLKNKKLQSKDIVRIAVDVAEGIKFMNDHGVAYRDLNTQRILLDRHGNACLGDMGVVTACKGVGEATEYETDGYRWLAPEIIAGDPESVIETSMSNIYSYGMIIWEMVTGEAAYSTLSPVQAAVGIAACGLRPEIPKDCQPNLRYIMTKCWNNTPSKRPKFSDILAILLQPYNNNR 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03741 594 PRINTS Tyrosine kinase catalytic domain signature 557 579 IPR001245 GO:0004672|GO:0006468
Trre10g03741 594 PRINTS Tyrosine kinase catalytic domain signature 513 535 IPR001245 GO:0004672|GO:0006468
Trre10g03741 594 PRINTS Tyrosine kinase catalytic domain signature 443 461 IPR001245 GO:0004672|GO:0006468
Trre10g03741 594 PRINTS Tyrosine kinase catalytic domain signature 407 420 IPR001245 GO:0004672|GO:0006468
Trre10g03741 594 Gene3D Transferase(Phosphotransferase) domain 1 329 591 - -
Trre10g03741 594 SUPERFAMILY Protein kinase-like (PK-like) 315 586 IPR011009 -
Trre10g03741 594 Pfam Protein tyrosine and serine/threonine kinase 371 585 IPR001245 GO:0004672|GO:0006468
Trre10g03741 594 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 97 586 - -
Trre10g03741 594 ProSiteProfiles Protein kinase domain profile. 336 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03741 Trre-Chr10 46822493 46826188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03741 319 588 MAP Kinase Kinase Kinase AT2G17700 33.213 3.77e-53 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Trre10g03741 PK_Tyr_Ser-Thr 7.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03741 - - pvu:PHAVU_008G258400g 888.641