Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03726 ATGTTCTCCGACAACAACAGCAGCAACAACAACAGCATCATCATGCTAGCAGCGATCATTTCTCTGCTCCTAGTAATTCTCTTTGTCCTCCTTCTCCATATCTACGCCAAATGCTTCCTCCTAGCTCAGTCCAATTCACAGTTCCCTCCTCGCCGCCGGCAAGCTCCGGTGAGTCTCTCCGATGTTCCAACTACTTCCAACTTCCACCACCATTTCAACATTGAAACATTCGAAAGACAACCCAAAGGACTTGAGTCAACAATAGTTTCGACAATTCCAACGTTTGTGTCGGAAGAAAAAACAGAGGAATTAGAATGTGTGATTTGTTTGAGTTACATTGAAAAAGGTGAGATTGTAAGAAAGTTACCAAAATGTGGACATGTATTTCATGTTGAATGCATTGATATGTGGTTGAATTCACATTGCAATTGTCCAATTTGTAGAAGTTTGATTGTTGAGAATGATTGTCATGGTGGTGGTGTTGTTGAGATTGTGATTGAAAGTTCAAGTGGTTCTTCTGTTTCTGTATCAGAAAGTTCTTCTTTGTCTTTGTTTGGTTTCTCTTTGAAGAGAATTCTTAGCAAAGTTTTTCTTTCTTCTCATCTACAAGGACCGAAGAGACTCACTCTCTACTCCGGAGACCCACAAATCTCCGACGACAATCTCAACTACGGAGACCTTCTCATCTGTGCCGGCGGTGACCTCTTTGTTCTTCCCTCTCAACTGGAACGGTGGACACCTGGTAGGGTGGCCTCCAGGGCTCTCACCAGAGCAATTCAAGCACAATATGATGTTGCGTACTATAAATGGTCAAAAATTCCATCAGACATAGTGAAATTATGGTTTCAAAAATTTGGTAGTTTTGTTGCTTGGCTGCCTGAGCATGATTATCAGATTAAGAAAATCTTCGAATCCAAAGGCTCAAGGCGTCTTTCTGAGATGTACTTGGATGCGAGGAACAAGCGCGAAAAACCATCTTGGATAGGAGAAGATGCTTGGAAAGATCTTGAGGAAGAGTGGAAGAAGCCAGCCTATCAAGAGATATCAAAGCGAAATAAGAAAAATCGTGATTCAAAGAAAGGTGGGTCTGTCCATACTGGCGGATCCAGATCTTTCATCGATCATACCTTAAAGATGGCTGAAGAGTTGGGTAGAGAACCCACAGTGGACGAGGTCTTTTTAAGAACTCACATCCGTAAGAAGGACTCAGATTGGGTTGATCTTAGATCTAAAAACACTTATGATACTTTTCAGACTAAGTTGAATCAGGCCTCAGAAGGTCCTGAGACGGTGGTTTATGGGTTTTGCCGGAAGGGTGAAGTAAAGAGAGGATCTGCAACGACGGTAGATATGAACGGTGGTTTCTATGGTTGTCGGATCTGTGACGATGGTGAAAGTGAAGAGAGTGAAAAGTGA 1416 0.4244 MFSDNNSSNNNSIIMLAAIISLLLVILFVLLLHIYAKCFLLAQSNSQFPPRRRQAPVSLSDVPTTSNFHHHFNIETFERQPKGLESTIVSTIPTFVSEEKTEELECVICLSYIEKGEIVRKLPKCGHVFHVECIDMWLNSHCNCPICRSLIVENDCHGGGVVEIVIESSSGSSVSVSESSSLSLFGFSLKRILSKVFLSSHLQGPKRLTLYSGDPQISDDNLNYGDLLICAGGDLFVLPSQLERWTPGRVASRALTRAIQAQYDVAYYKWSKIPSDIVKLWFQKFGSFVAWLPEHDYQIKKIFESKGSRRLSEMYLDARNKREKPSWIGEDAWKDLEEEWKKPAYQEISKRNKKNRDSKKGGSVHTGGSRSFIDHTLKMAEELGREPTVDEVFLRTHIRKKDSDWVDLRSKNTYDTFQTKLNQASEGPETVVYGFCRKGEVKRGSATTVDMNGGFYGCRICDDGESEESEK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03726 471 SMART ring_2 106 147 IPR001841 -
Trre10g03726 471 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Trre10g03726 471 SUPERFAMILY RING/U-box 95 154 - -
Trre10g03726 471 Pfam Plant transposase (Ptta/En/Spm family) 330 425 IPR004252 -
Trre10g03726 471 MobiDBLite consensus disorder prediction 347 363 - -
Trre10g03726 471 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 299 - -
Trre10g03726 471 CDD RING-H2_EL5-like 105 148 - -
Trre10g03726 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 152 IPR013083 -
Trre10g03726 471 Pfam Ring finger domain 105 148 IPR001841 -
Trre10g03726 471 MobiDBLite consensus disorder prediction 347 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03726 Trre-Chr10 46683251 46692724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03726 11 191 C3H Transcription Factor Family AT2G42360 34.146 4.93e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03726 - - tpra:123916568 269.626