Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03714 ATGACTAAGATTCATTCTAATTCATGGGTGAGAGGTAAGTGTATTGGTAAAGGAGCGTTTGGCGTTGTGAATTTAGCTTATTCAAAAAGCGATTCTAGTGTTTTCGCGGTGAAATCTGTTGATTTAAAAACAGGTCATCCAAATCAGTTACAAGCGTTGGAAAATGAAATTCGGATATTGAAACGGTTATCTTCTTCTTATTCTTCTTCTTGTTCTTCGCACGTGGTAAGTTTTTACGGCGAAGATGTCACGTGTGAAGGAGAAGGAACGACGTCGTTTAAGAATCTACACTTGGAGTATATGCCAGGTGGCACCGTTGCTGACATAGATCGTGCTGACGTGGATGAACGGTTAGTTAGAAGCTTCGCGTGGTGTCTAGTTAACGCGCTGAGTGAAATTCACGCGCGTGGTGTTGTTCACTGTGATGTGAAAGGGAGGAATGTTCTCGTCGCCGGTGATGGTTCCATCGTTAAACTTGCTGATTTTGGTTCGGCGGTGGAATTTGAATTATCCGGTGGAGAGTGTGAAGTTCCGCGTGGAAGTCCGATGTGGATGGCGCCGGAGGTTATTCGCCGGGAGTATCAAGGACCGGAATCCGATGTGTGGTCACTTGGATGTACTTTGATTGAAATTTTCACCGGAAAATCGCCGTGGGAGGATCGCGGTATTGATACTTTGAGTCGAATTGGATTTTCCAATGAGTTACCGGAGTTTCCGAGCAGTTTATCGGAGCTTGGAAGAGATTTTCTCGAGAAATGTCTCCAAAGAGATCGGAGCCGGAGATGGAGATGTGATCAGCTACTTCAGCATCCATTTCTATTACCGTGTGATCGCGTTGTGGAATCGTCACCTCGTTGCGTTTTGGATTGGGTTGACTCGCAATTCACTGAGTCAGAAAACGAGTTCGAGTCCGAATTAGAATTCGAAGAAAATGAAATGCAATTGAATAATAGTGATAAAAATTTATTTAAAAATAGAATTAGTAAATTAGCAACGGGGTTAAGTGTAAATTGGGAAAATGATGATTGGGTTGTGGTGAGGTCAATTTCGTCAGAAGAGAAAGAACCAAATTATGAATGTGAAGAAGTAGGGGTAACATGGGAATTTGAGAATGTTGGGAGGGTAGAAGAGGAAATGGAGGTAGGGGCTAGTTTGGTAAATTTGAACTATGATGAAAGGGTAAAACGGGAAATGTGGAAGTTTGGTAACCGCAGGAACAGCATTATAGGTGGCATTATAGGTGGAAGTGGAAGTTGTTGTGGCTGGATATGTCGGTATAGATACGGTTGGGGAAAGTTCAATGATCGATTACATTCTTCCAATACTGAATACTTGTACAATTTATAA 1347 0.4239 MTKIHSNSWVRGKCIGKGAFGVVNLAYSKSDSSVFAVKSVDLKTGHPNQLQALENEIRILKRLSSSYSSSCSSHVVSFYGEDVTCEGEGTTSFKNLHLEYMPGGTVADIDRADVDERLVRSFAWCLVNALSEIHARGVVHCDVKGRNVLVAGDGSIVKLADFGSAVEFELSGGECEVPRGSPMWMAPEVIRREYQGPESDVWSLGCTLIEIFTGKSPWEDRGIDTLSRIGFSNELPEFPSSLSELGRDFLEKCLQRDRSRRWRCDQLLQHPFLLPCDRVVESSPRCVLDWVDSQFTESENEFESELEFEENEMQLNNSDKNLFKNRISKLATGLSVNWENDDWVVVRSISSEEKEPNYECEEVGVTWEFENVGRVEEEMEVGASLVNLNYDERVKREMWKFGNRRNSIIGGIIGGSGSCCGWICRYRYGWGKFNDRLHSSNTEYLYNL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03714 448 Pfam Protein kinase domain 11 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03714 448 Gene3D Transferase(Phosphotransferase) domain 1 3 340 - -
Trre10g03714 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Trre10g03714 448 SMART serkin_6 9 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03714 448 CDD STKc_MAPKKK 8 273 - -
Trre10g03714 448 ProSiteProfiles Protein kinase domain profile. 9 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03714 448 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 8 352 - -
Trre10g03714 448 FunFam Serine threonine protein kinase putative 7 331 - -
Trre10g03714 448 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre10g03714 448 SUPERFAMILY Protein kinase-like (PK-like) 4 283 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03714 Trre-Chr10 46541728 46543587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03714 9 359 MAP Kinase Kinase Kinase AT2G30040 57.345 4.55e-124 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre10g03714 Pkinase 5.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03714 - - tpra:123921217 732.25