Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03712 ATGGAGACAAGGATGTTGGGATTGACTTCATTCCCTTGCTACACAATACCAAACCGTTCTCGTTTAAATCTTAGGTCATCATTGTCTATGCGACATGAATTTCCTCTTGCAAGCAAAATCGTTGTTAAAAATTTACCTTATTTTACACGCGAAACTGCTCTGCAAAAGGAATTTTCAAATTTTGGCAAAATAGCTGAAGTTCAAATGGTTAAAGATGAGATCACGAAAAGATCAAAGGGACTTGCTTTTATTCAATACACATGTCAAGATGATGCCGTGCTTGCACTAGAAAACATGGATCAAAAGAATTTTTATGGAAGGACGATTTCTGTAGAAATTGCAAAACCTGGTTGGGATCATCTTGGTATACGTCCAAGACCTCCAAGGGCCTCTGGGCCGCCAAAGAAGTGGAATTTACCCGAAGAACAAGGAGAAGAGGTAGATTGTTGGTACTGA 456 0.3925 METRMLGLTSFPCYTIPNRSRLNLRSSLSMRHEFPLASKIVVKNLPYFTRETALQKEFSNFGKIAEVQMVKDEITKRSKGLAFIQYTCQDDAVLALENMDQKNFYGRTISVEIAKPGWDHLGIRPRPPRASGPPKKWNLPEEQGEEVDCWY 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03712 151 Gene3D - 20 145 IPR012677 -
Trre10g03712 151 MobiDBLite consensus disorder prediction 122 147 - -
Trre10g03712 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Trre10g03712 151 SMART rrm1_1 39 112 IPR000504 GO:0003723
Trre10g03712 151 SUPERFAMILY RNA-binding domain, RBD 37 132 IPR035979 GO:0003676
Trre10g03712 151 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 38 132 - -
Trre10g03712 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03712 Trre-Chr10 46504281 46507436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03712 24 119 Eukaryotic Initiation Factors Gene Family AT2G36660 31.000 1.30e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03712 - - psat:127118516 203.756