LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g03708	ATGTCCTTTCAACTAGGTCAAGTTCCAGCTATTATCATTTCATCTTCAAAAGCAGCTGAATCATTCCTTAAAACACATGACATCAATTTTGCAAGCAGACCAAAGGTTACAGCATCTGAACTCTTGTCTTATGGATCTAAAGGGATTGCTTTTTCTGAGTATAGTCCTTATTGGCGTAGTATGAAAAAACTTTGCACTGTAAAACTTCTTAGTGCTTCAAAAGTTGAGATGCTTGGTCCTATTAGGAAGGAGAAGTTGGATGTTTTGGTTAAATCCATAAAAGCTGCTTTGGTAGGTGAAGTTGTTAATATTAGTGAGGTTGTAGCAAATCTTATTGAAGATATTATGTATAAGATGATGTTGGGTAGGAGTAAGTATGAACAATTTGACTTAAAGAAGTTGGTTCAAGAAGCAACAAATTTGTATGGAGCTTTTAATCTTGCTGATTATGTTCCTTGGTTAGGTGCACTTGATTTTCAGGGGTTAACACGATCGTGCAAGAAAACGAGTAAATCACTTGATGTGGTGTTGGAAGTGATATTAAAAGATCATGAACATATTTCTAATTTAGACAAAACTCATCATGAAGACTTCGTCAACATACTTCTTTCAAATATGAACAAAGCCATCGATCCAGAAAATGATCAAAATCATGTTATTGATCGAAGTAACGTTAAAGCAGTTTTACTAGACATGATTGTGGCAGCAATTGATACATCAGCTACCACAATTGAATGGGCCTTAACCGAACTTCTGAGGCACCCAAGAGTGATGAAAAATCTTCAAGATGAGATACAAAATGAAGTTGGAACTAAAAGAATGGTTGAAGAAAAGGATTTGAAGAAGTTTAATTACTTAGATATGGTGATTGATGAAACGTTAAGATTATATCCCGTTGCACCTTTACTAGTCCCTCGTGAATGCGGAGAGAGCATAACAATTGATGGTTATTTTATTAAGGAAAAGACACGAGTTATAGTAAATGCATGGGCTATAGGGAGAGATTCAAATGTTTGGTCAGATAATGTTGAAGAATTTTATCCGGAGAGATTCATTAACAAGAAAATGAATTATCTAGGACAAGATTTTGAATCTATACCTTTTGGTGCTGGTCGTAGACGTTGTCCTGGAATTCAATTGGGTTTAGTTAGTGTTAAATTGGTTTTAGCTCAATTGGTGCATTGTTTTAATTGGAAACTTCCCAATAATATCAATCCTTCCAATTTAAATATGGAGGAGAAATTTGGACTCTCTATACCAAGAGCTCAACACTTGCATGCAATTCCAAGTTACCGTTTGTCATGTGATGTCAATTGTCAAGCATGA	1326	0.3507	MSFQLGQVPAIIISSSKAAESFLKTHDINFASRPKVTASELLSYGSKGIAFSEYSPYWRSMKKLCTVKLLSASKVEMLGPIRKEKLDVLVKSIKAALVGEVVNISEVVANLIEDIMYKMMLGRSKYEQFDLKKLVQEATNLYGAFNLADYVPWLGALDFQGLTRSCKKTSKSLDVVLEVILKDHEHISNLDKTHHEDFVNILLSNMNKAIDPENDQNHVIDRSNVKAVLLDMIVAAIDTSATTIEWALTELLRHPRVMKNLQDEIQNEVGTKRMVEEKDLKKFNYLDMVIDETLRLYPVAPLLVPRECGESITIDGYFIKEKTRVIVNAWAIGRDSNVWSDNVEEFYPERFINKKMNYLGQDFESIPFGAGRRRCPGIQLGLVSVKLVLAQLVHCFNWKLPNNINPSNLNMEEKFGLSIPRAQHLHAIPSYRLSCDVNCQA	441

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g03708	441	Coils	Coil	258	278	-	-
	Trre10g03708	441	PRINTS	E-class P450 group I signature	18	39	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Trre10g03708	441	PRINTS	E-class P450 group I signature	375	398	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Trre10g03708	441	PRINTS	E-class P450 group I signature	287	305	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Trre10g03708	441	PRINTS	E-class P450 group I signature	224	241	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Trre10g03708	441	PRINTS	E-class P450 group I signature	244	270	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Trre10g03708	441	PRINTS	E-class P450 group I signature	365	375	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Trre10g03708	441	Gene3D	Cytochrome P450	1	432	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Trre10g03708	441	CDD	CYP71-like	1	425	-	-
	Trre10g03708	441	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	368	377	IPR017972	GO:0005506\|GO:0016705

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g03708	Trre-Chr10	46484515	46487225	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g03708	4	435	Monolignol Biosynthesis Gene Families	AT4G36220	37.978	9.20e-107	324

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g03708	-		-	psat:127113357	639.417

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