Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03689 ATGTGCAGGAAAACTTGTCAAACTGGTTTGATCATGGGGTATGAGAATGATAATAAAGAAGGGAAGAATTGCGAGATTTCTTCTTTGCTTGAATTTTCAGCAGCAGATGATGTGATTGGTTTCAAAGATGCGGTCGAAAATGACGGTTGTGATGTTGATGAGGTTGGTTTGTGGTATGGAAGGATCGTTTGTTCGAAAAAATTAGGTTATGAAGAGAGGACTCCTCTTATGGTTGCTGCTATGTTTGGAAGTTTGGATGTATTGGCTTATATTCTTGGAACAGGCCGCGTTGATGTTAATCGGTCTTGTGGATCCGATGGTGCTACTGCTCTTCATTGTGCTGTTGTTGGCGGTTCTGCTGCTTCCGCAGAGATTATCAAGCTTTTGCTCAATGCATCTGCGGATCCTAGTGTTGTTGATGCTAATGGTAACCGACCTGTTGACTTGATTGTTTCTGGGGCCAATTCTATCTTCAATCCGAGGAAGAGGATGCTGCAAGCTCTTTTGGAGGGTACGGTTGGTGGTGCTGATCAGACATGTCTTGCATTTCCGGAGACAATTGACGTTGTTGATGAATATCAAAGGCAAGATATAAACACGCCTCGTGTTTCAAAAGATTATCCTGTTGATCTCTCTCTTCCAGACATAAAGAATGAGTTATATAGTACCGATGAATTTAGGATGTATACATTCAAAGTTAAGCCTTGTTCAAGGGCGTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGACGTGATCCAAGGAAATATCATTATAGCTGTGTCCCTTGTCCTGAGTTTCGCAAAGGTTCGTGCAGCAAAGGAGATTCATGTGACTATGCACATGGGATTTTTGAGTGCTGGCTTCATCCTGCGCAGTATCGTACACGTCTTTGCAAGGATGAGAGTTCATGCACGAGAAGAGTTTGCTTCTTTGCTCACAGGATTGAGGAGCTTCGCCCTTTGTATGCTTCTACCGGTTCTGCTATTCCGTCTCCTAGGTCATATTACAGTACTGCTTCTACATTGGAAATGGGTTCGCTTAACCCAATGTCACTTGGTTCTCCATCGGTTTTGATACCACCATCCTCAACGCCGCCTTTGACTCCATCTGGAGCATCGTCACCTGTTGCTGCTACAGCCATGTGGCAGACACAGTCTAATGTTTCGGTCCCTAGCCTACAGCTTCCCAAAAGCAGGTTCATGAAGACTGGAATGACAGCTAGAGATATCGATTCAGATATTGCAATGCTTAGGAAGCAACTAATGATGGACGAGATATCCGGTCTTTCCTCACCATCCAACTGGAAAAATTCCATGCCTAACAGTCCATCTTTTCCGGTTTCTTTGAGCGATGATCATACTACCAGAGAACTAAATAGGTTTTCGGGGATGAAGCCTACTAACCTTGAAGACATTTACGGATCTCTTGATCCATCAATGTTGCACAAATTCCACGCTATCTCACTTGATGGTACAGGATCTCAGTTACAATCTCCAACTGGAATCCAAATGCGTCCCAATATGAATCAGCAGTTACAAAACTATTCTTCAGGCCATTCCACTTCGAGTAGGATTGGATCGCCACCCTATAATTTTGATCCATCCGGGGAGTTATCCGCAGCAACTTTAAATTCAAGAGCTGCTGCCTTTTCTAAGCGGAGCCAGAGCTTTATCGAGCGCAGTGTGGCAAACCATCATTCCGAGCATCTTTCTCCTGTGAAGCCTTACGCTTTTCCTAACTGGGGCTCACCCGATGGAAAATTGAATTGGACCGTACAAGGAGAAGAACTGAATAAGCTGAGGAAATCATCTTCTTTTGGATTTCGAAGCAGCAATACTCCTTTAAATCAAGCTGCAACTAGAGCACAGGAAAATGACAACGAACCAGATGTGTCTTGGGTTAATTCACTTGTAAAGGACGCTACACCGCAGGAATCTGGTCGGTTTAGTACTGAAGATCAGAAAAGGAAACTGCAATACAATCTTAACAATGGAACCGATGCGATTCCAGCTTGGTTAGAGCAATTGTACATTGATCAGGAACAAACTGTGCATTGA 2082 0.438 MCRKTCQTGLIMGYENDNKEGKNCEISSLLEFSAADDVIGFKDAVENDGCDVDEVGLWYGRIVCSKKLGYEERTPLMVAAMFGSLDVLAYILGTGRVDVNRSCGSDGATALHCAVVGGSAASAEIIKLLLNASADPSVVDANGNRPVDLIVSGANSIFNPRKRMLQALLEGTVGGADQTCLAFPETIDVVDEYQRQDINTPRVSKDYPVDLSLPDIKNELYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYRTRLCKDESSCTRRVCFFAHRIEELRPLYASTGSAIPSPRSYYSTASTLEMGSLNPMSLGSPSVLIPPSSTPPLTPSGASSPVAATAMWQTQSNVSVPSLQLPKSRFMKTGMTARDIDSDIAMLRKQLMMDEISGLSSPSNWKNSMPNSPSFPVSLSDDHTTRELNRFSGMKPTNLEDIYGSLDPSMLHKFHAISLDGTGSQLQSPTGIQMRPNMNQQLQNYSSGHSTSSRIGSPPYNFDPSGELSAATLNSRAAAFSKRSQSFIERSVANHHSEHLSPVKPYAFPNWGSPDGKLNWTVQGEELNKLRKSSSFGFRSSNTPLNQAATRAQENDNEPDVSWVNSLVKDATPQESGRFSTEDQKRKLQYNLNNGTDAIPAWLEQLYIDQEQTVH 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03689 693 PANTHER UNKEMPT FAMILY MEMBER 31 648 IPR045234 -
Trre10g03689 693 Pfam Ankyrin repeats (3 copies) 67 139 IPR002110 GO:0005515
Trre10g03689 693 Gene3D - 265 328 - -
Trre10g03689 693 ProSiteProfiles Ankyrin repeat profile. 106 141 IPR002110 GO:0005515
Trre10g03689 693 ProSiteProfiles Zinc finger C3H1-type profile. 270 292 IPR000571 GO:0046872
Trre10g03689 693 SMART ANK_2a 71 101 IPR002110 GO:0005515
Trre10g03689 693 SMART ANK_2a 106 138 IPR002110 GO:0005515
Trre10g03689 693 ProSiteProfiles Ankyrin repeat region circular profile. 106 140 - -
Trre10g03689 693 SUPERFAMILY Ankyrin repeat 49 156 IPR036770 -
Trre10g03689 693 Gene3D - 17 110 IPR036770 -
Trre10g03689 693 Gene3D - 111 171 IPR036770 -
Trre10g03689 693 MobiDBLite consensus disorder prediction 612 637 - -
Trre10g03689 693 FunFam Zinc finger CCCH domain-containing protein 66 223 291 - -
Trre10g03689 693 SMART c3hfinal6 300 323 IPR000571 GO:0046872
Trre10g03689 693 SMART c3hfinal6 265 291 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03689 Trre-Chr10 46315292 46317373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03689 16 688 C2H2 Transcription Factor Family AT5G12850 38.661 3.86e-149 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre10g03689 Ank_2 1.4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03689 - - aprc:113846970 1009.98