Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03667 ATGTCTCACTTCGGAAGGCAAGGTCCTCCAGACATCGCTGACACCTACTCTCTCCTCGTCCTCAACATCACTTTCCGTACAACCGCTGATGACCTATTTCCTCTGTTTGATAAATACGGCAAAGTTGTTGACATTTTCATCCCCAAAGATCGAAGGACTGGTGAATCGAGGGGTTTCGCTTTTGTGCGTTACAAGTATGCCGATGAAGCTTCAAAGGCTGTTGATAGACTCGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCAAAATATGGCCCTAATGCTGAGAGAATTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAGAAGGCATCACGATGATTACAGAGACAAGGATTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGTATGGACGTGATAGGTACCGTGGTGGGCGAGATAGGGACCATCGCCGCCGAAGCAGAAGCCGAAGTGCCAGTCCCGATTACAAGCGCCGTGGAAGGGGGCGCTATGATGATGAGCGTCATAGTAGAAGCCGGAGCAGATCAGTAGACAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTGGAAGGAGCCCTTCTCCTAAGAAGAGTATTTCTCCCCAAAGGAGTACTTCTCCCAGGAAAAGTCCTCGCCGTGAAAGTCCTGATAATCGTAGCCGTGATGGAAGGTCTCCTACTCCTCACAGTGTCTCACCACGAGGCCGCCTTGATGCATCCCGAAGCCCATCTCCTCGAAATTCAAACGGTGTTGCGCATGTTGACATTGTGGCTGTTGATGCTGTGTCTATGTCATTGATGATTGTTCGCGAGTTTGGTGCTGGTTCCAAACTGTTTTTTACCAGTGTGCCGGTTAGAAAGATGCTTAGTTGA 921 0.4973 MSHFGRQGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPRSKSSRSRSPSRRHHDDYRDKDYRRRSRSRSYDRYGRDRYRGGRDRDHRRRSRSRSASPDYKRRGRGRYDDERHSRSRSRSVDSRSPARRSPSPGRSPSPKKSISPQRSTSPRKSPRRESPDNRSRDGRSPTPHSVSPRGRLDASRSPSPRNSNGVAHVDIVAVDAVSMSLMIVREFGAGSKLFFTSVPVRKMLS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03667 306 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Trre10g03667 306 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Trre10g03667 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Trre10g03667 306 SMART rrm1_1 17 90 IPR000504 GO:0003723
Trre10g03667 306 MobiDBLite consensus disorder prediction 100 266 - -
Trre10g03667 306 MobiDBLite consensus disorder prediction 223 240 - -
Trre10g03667 306 Gene3D - 4 103 IPR012677 -
Trre10g03667 306 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 254 - -
Trre10g03667 306 MobiDBLite consensus disorder prediction 163 196 - -
Trre10g03667 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Trre10g03667 306 MobiDBLite consensus disorder prediction 121 156 - -
Trre10g03667 306 MobiDBLite consensus disorder prediction 197 222 - -
Trre10g03667 306 CDD RRM_SRSF2_SRSF8 18 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03667 Trre-Chr10 46142103 46145438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03667 17 89 Eukaryotic Initiation Factors Gene Family AT4G34110 39.726 3.80e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03667 K12891 - gmx:100778928 316.235