Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03666 ATGCAGCCTCGCCGGAGAAGGTGTGTCCGGCCATCGGCGGTGCTGGAGAAGGAATCGAAACATTTTATGAAAGCTATACTTCCTTCACCCATTCATGCTAAACAAATTAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTGAAGAATGTTGCTACAATTACTGTTCCAGATGGTTGTGTATGGAAAATGGAATTGAAGAAAAGTGATGAGAACGTTTTCTTTTGCAACAGATGGCAAGAGTTCGTTGAATACTATTCTATAGGATATGGTTGCTATCTGTCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACTCCAAGTACTAAACCTAGGAAAAGGTCCAAGGTTGAAACAAGTGAAAGTCGTAGGAAAAAGGTCAAAATCATGTCTAAAGATGCTTCAACAAGAGCAAAGGATGCTGCCAATGAATTCAACCCAAATAATCCTTATTTTTGTTCCAAAATTGCTATCAGAAAATATGTGTATGTTCCTTCTGATTTTGCTAGAAATTATTTGAAGCCAAATGTTCCTATAAAGCTCCAAAACTCTAATGGAAAGCAATGGAATGTTTTTTGCAAATTGCATGAAGCCAGATTATCAGGAATGAATATATCAAAGGGATTTTCTAAATTTCAAAGGGACAGCAACCTGTCACATGGAGATTATTGTGTATTTGAGCTGATCAAGAAGAAGCCGGTTGTGCTAAAAGTCACGATGTTTCGCGCAGTTGACTATTGCATTTAA 801 0.3633 MQPRRRRCVRPSAVLEKESKHFMKAILPSPIHAKQIRIPDEFITRFGNELKNVATITVPDGCVWKMELKKSDENVFFCNRWQEFVEYYSIGYGCYLSFKYEGNSKFSVIIFDATSVEICYPFKTPSTKPRKRSKVETSESRRKKVKIMSKDASTRAKDAANEFNPNNPYFCSKIAIRKYVYVPSDFARNYLKPNVPIKLQNSNGKQWNVFCKLHEARLSGMNISKGFSKFQRDSNLSHGDYCVFELIKKKPVVLKVTMFRAVDYCI 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03666 266 Gene3D - 147 265 IPR015300 -
Trre10g03666 266 CDD B3_DNA 20 112 IPR003340 GO:0003677
Trre10g03666 266 ProSiteProfiles B3 DNA-binding domain profile. 165 262 IPR003340 GO:0003677
Trre10g03666 266 CDD B3_DNA 172 260 IPR003340 GO:0003677
Trre10g03666 266 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Trre10g03666 266 Pfam B3 DNA binding domain 179 261 IPR003340 GO:0003677
Trre10g03666 266 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Trre10g03666 266 SUPERFAMILY DNA-binding pseudobarrel domain 163 260 IPR015300 -
Trre10g03666 266 Gene3D - 13 115 IPR015300 -
Trre10g03666 266 SMART B3_2 171 262 IPR003340 GO:0003677
Trre10g03666 266 SMART B3_2 22 114 IPR003340 GO:0003677
Trre10g03666 266 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Trre10g03666 266 PANTHER B3 DOMAIN-CONTAINING 16 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03666 Trre-Chr10 46136296 46138521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03666 129 263 B3 DNA Binding Superfamily AT3G18990 37.762 7.10e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre10g03666 B3 1.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03666 - - mtr:120575755 414.461