Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03665 ATGCAGCCTCACCGTGGAAGGTGTGTCCGGCCATCGGCGGTGCCGGAGAAGGAACCAAAGCATTTTATGAAAGCCATACTTCCTTCACCCATTCATGCTAAACAAATTAGAATTCCAGACGAATTTATAACAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATCATTGTTCCTGATGGTTGTGTTTGGGAAATGGAACTGAAGAAGTGCGACGAACATGTTTTCTTTTGCAACAGATGGCAAGAGTTCGTCGAATATTATTCTATTGGATATGGTTGTTACCTATCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTGCTACCCTTTCAAAACTCAAAACTGTAGTAATGAAGAACCAAACACAAAGTATGATAGTCCTAGGAAAAAGTCCAAGGTTGAAACAAGTGAGAGTTGTGGAAAAAAGGCTAAAAGCATGTATAAAGATGCTTCTAAAAAAGCTAAGGATGCTGCCAATGAATTCAACCCAAACAATCCTTATTTTCGTTCCAAAATCAGTTGTAGTGGACATGCGCATGTTCCTGTTGATTTTGCTCCAAAGTATCTGAAGCCAAATGTTCCAATAAAGCTCCAAAATTCTAATGGAGCTCAATGGGAAGTATTTTGCAGATTGTATGAGGCCAAATGGTACAATATGCAAATATCAAAGGGATTTTCTAAATTTCAAAGGGACAACAACCTGTCACATGGAGATTATTGTGTGTTTGAGCTGATCAAGAAGAAGCCGATTGTGCTAAAGGTCACAATGTTTCGCACAGTTGACTATCGCGATTAA 831 0.3791 MQPHRGRCVRPSAVPEKEPKHFMKAILPSPIHAKQIRIPDEFITRFGNELKNVATIIVPDGCVWEMELKKCDEHVFFCNRWQEFVEYYSIGYGCYLSFKYEGNSKFSVIIFDATSVEICYPFKTQNCSNEEPNTKYDSPRKKSKVETSESCGKKAKSMYKDASKKAKDAANEFNPNNPYFRSKISCSGHAHVPVDFAPKYLKPNVPIKLQNSNGAQWEVFCRLYEAKWYNMQISKGFSKFQRDNNLSHGDYCVFELIKKKPIVLKVTMFRTVDYRD 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03665 276 CDD B3_DNA 20 112 IPR003340 GO:0003677
Trre10g03665 276 ProSiteProfiles B3 DNA-binding domain profile. 207 272 IPR003340 GO:0003677
Trre10g03665 276 CDD B3_DNA 192 270 IPR003340 GO:0003677
Trre10g03665 276 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Trre10g03665 276 Gene3D - 13 116 IPR015300 -
Trre10g03665 276 SMART B3_2 179 272 IPR003340 GO:0003677
Trre10g03665 276 SMART B3_2 22 114 IPR003340 GO:0003677
Trre10g03665 276 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Trre10g03665 276 SUPERFAMILY DNA-binding pseudobarrel domain 173 270 IPR015300 -
Trre10g03665 276 Gene3D - 158 275 IPR015300 -
Trre10g03665 276 PANTHER B3 DOMAIN-CONTAINING 16 264 - -
Trre10g03665 276 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Trre10g03665 276 Pfam B3 DNA binding domain 189 271 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03665 Trre-Chr10 46130655 46134309 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03665 123 273 B3 DNA Binding Superfamily AT3G18990 36.250 3.95e-17 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre10g03665 B3 3.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03665 - - mtr:120575755 393.66