Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03664 ATGGAGGCTCGCCAGCCAAGGTGTTTCCGGCCATCGGAGGTACTGGAGAAGGAATCGAAACATTTTATGAAAGCCATACTTCCTTCACCTATTCATGCTAAACAAATTAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATAATTGTTCCTGATGGTTGTGTTTGGGAAATGGAACTGAAGAAATGCGATGAACATGTTTTCATTTGCAACAGATGGCAAGAGTTCGTTGAATACTATTCTATAGGATATGGTTGCTACTTGTCTTTCAAATATGAAGGGAATTCAAATACAAATGAAGAAGCAAACACAAAGTATGATAGTCCTAGGAAAAGGTCCAAGGTTGAAACCAATGAAAGTTGTGGGAAAAAGGCCAAAAGCATGTCTAAAGATGCTTCAAAAAGTGCAAAGGATGCTGCCAATGAATTCAACCCAAACAATCCTTACTTTCGTATAAAAATCACTATGAGAAAACATGCGTATGTTCCTTCTGATTTTGCTCGAAAGTATTTGAAGCCAAATGTTCCTATAAAGCTCCAAAATTCTTATGGAGAACAATGGGAAGTGTATTGCATATCGCATGGTGCCAGATGGTACAATATGGAAATATCAAAGGGATTTTTTATATTTCTAAGGGACAGCAACCTGTCACATGGAGATTATTGTGTGTTTGAGCTGATCAAGAAGAAGCCGGTTGTGCTAAAAGTCACGATGTTTCGCGCAGGTGACTATCACGATTAA 765 0.3804 MEARQPRCFRPSEVLEKESKHFMKAILPSPIHAKQIRIPDEFITRFGNELKNVATIIVPDGCVWEMELKKCDEHVFICNRWQEFVEYYSIGYGCYLSFKYEGNSNTNEEANTKYDSPRKRSKVETNESCGKKAKSMSKDASKSAKDAANEFNPNNPYFRIKITMRKHAYVPSDFARKYLKPNVPIKLQNSYGEQWEVYCISHGARWYNMEISKGFFIFLRDSNLSHGDYCVFELIKKKPVVLKVTMFRAGDYHD 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03664 254 ProSiteProfiles B3 DNA-binding domain profile. 153 250 IPR003340 GO:0003677
Trre10g03664 254 PANTHER B3 DOMAIN-CONTAINING 16 241 - -
Trre10g03664 254 CDD B3_DNA 20 106 IPR003340 GO:0003677
Trre10g03664 254 Gene3D - 13 110 IPR015300 -
Trre10g03664 254 MobiDBLite consensus disorder prediction 107 148 - -
Trre10g03664 254 MobiDBLite consensus disorder prediction 112 145 - -
Trre10g03664 254 Gene3D - 136 253 IPR015300 -
Trre10g03664 254 Pfam B3 DNA binding domain 167 249 IPR003340 GO:0003677
Trre10g03664 254 Pfam B3 DNA binding domain 22 106 IPR003340 GO:0003677
Trre10g03664 254 CDD B3_DNA 169 248 IPR003340 GO:0003677
Trre10g03664 254 SUPERFAMILY DNA-binding pseudobarrel domain 17 105 IPR015300 -
Trre10g03664 254 SUPERFAMILY DNA-binding pseudobarrel domain 151 249 IPR015300 -
Trre10g03664 254 SMART B3_2 160 250 IPR003340 GO:0003677
Trre10g03664 254 SMART B3_2 22 109 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03664 Trre-Chr10 46126418 46129127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03664 115 251 B3 DNA Binding Superfamily AT3G18990 36.552 2.39e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre10g03664 B3 4.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03664 - - mtr:120575755 339.732