Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03663 ATGTCTAAAGATGCTTTAAAAAGTGCAAAGGATGCTGTCAATGAGTGCAACCCAAACAATCCTTATTTTCGTTTAAAAATCACTATGAGAAAACATGGGTATGTTCCTTGTGATTTTGCTCGAAAGTATTTGAAGCCAAATGTTCCTATAAAGCTCCAAAATTCTTATGGAGAACATTGGGAAGTTTATTGCATATTTCTGCATGGTATGGAAATATCAAAGGGATTTTCTAAATTTCAAAGGGACAACAACCTGTCTCATGGAGATTATTGTGTGTTTGAGCTGATCAAGAAGAAGCCGGTTGTGCTAAAAGTCACAATGTTTCGCACAATTGACTATCGCGATTAA 348 0.3563 MSKDALKSAKDAVNECNPNNPYFRLKITMRKHGYVPCDFARKYLKPNVPIKLQNSYGEHWEVYCIFLHGMEISKGFSKFQRDNNLSHGDYCVFELIKKKPVVLKVTMFRTIDYRD 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03663 115 ProSiteProfiles B3 DNA-binding domain profile. 35 111 IPR003340 GO:0003677
Trre10g03663 115 SUPERFAMILY DNA-binding pseudobarrel domain 17 109 IPR015300 -
Trre10g03663 115 Gene3D - 2 114 IPR015300 -
Trre10g03663 115 CDD B3_DNA 34 109 IPR003340 GO:0003677
Trre10g03663 115 SMART B3_2 22 111 IPR003340 GO:0003677
Trre10g03663 115 Pfam B3 DNA binding domain 30 109 IPR003340 GO:0003677
Trre10g03663 115 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 110 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03663 Trre-Chr10 46125725 46126147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03663 1 113 REM Transcription Factor Family AT1G49480 38.017 1.16e-16 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre10g03663 B3 1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03663 - - mtr:120575755 160.614