LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g03662	ATGTTCCAAGTTACTAGAACCATAGCTCTACACTCATCTTCTCTATGCAAAGTCTCTTCAGATAAACCATCATCACCACCAACCAATTTAACTCGCAAACCAAAAAGTCTCCTTCAAAACAATCCACTTTACACACCAACTCATGAAAAACTCTCCCTTCAATTCAAAGAAAAAATCCTATGTCTTGAAGTTATGGGTATTGATTCAGGTAAAGCACTCTCTCAAAATCCTAACCTTCATTCAGCTACCTTAGAATCCATTCATTCCATTATCACCTTTCTTCTCTCCAAAGGCATTCAACATAAAGACCTTCCAAGAATCTTTGGTATGTGTCCTACAATTCTTACTTCAGACATCAAAACTGATCTTAATCCAGTTTTTGATTTTCTTGTACAAGAGCTTAAAGTACCTGAACATAACTTTAGAAAAGTTATAAAAAAATGTCCAAGATTTCTTACTTCTAGTGTGAAGAATCAGCTTAAACCAGCTTTGTTTTATCTTAATAGATTAGGGTTAAGGGATTTAGAAGCTTTGGCTTATCAAGATTGTGTTTTATTAGTTTCAAATGTTGAAAAGACACTTATTCCTAAACTTAAGCATTTGGAAAGTATGGGATTTTCTAAAGAAGAGGTTAGATGTATGGTGTTAAGAAGTCCTGCATTGTTGACTTTTAGTATTGAGAATAATTTTATGCCTAAATTTGAGTATTTTTGTGTTGAAATGAAGAGGAAATTGGATGAGTTGAGAGAGTTTCCTCAATATTTCTCTTTTAGTTTGGAGAATAGGATAAAGCGAAAGCCAATACAGAACTTATAG	816	0.3321	MFQVTRTIALHSSSLCKVSSDKPSSPPTNLTRKPKSLLQNNPLYTPTHEKLSLQFKEKILCLEVMGIDSGKALSQNPNLHSATLESIHSIITFLLSKGIQHKDLPRIFGMCPTILTSDIKTDLNPVFDFLVQELKVPEHNFRKVIKKCPRFLTSSVKNQLKPALFYLNRLGLRDLEALAYQDCVLLVSNVEKTLIPKLKHLESMGFSKEEVRCMVLRSPALLTFSIENNFMPKFEYFCVEMKRKLDELREFPQYFSFSLENRIKRKPIQNL	271

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g03662	271	PANTHER	CGI-12 PROTEIN-RELATED	13	264	IPR003690	GO:0003690\|GO:0006355
	Trre10g03662	271	MobiDBLite	consensus disorder prediction	16	41	-	-
	Trre10g03662	271	Gene3D	Transcription termination factor 3, mitochondrial	123	266	IPR038538	-
	Trre10g03662	271	Pfam	mTERF	62	174	IPR003690	GO:0003690\|GO:0006355
	Trre10g03662	271	Pfam	mTERF	186	266	IPR003690	GO:0003690\|GO:0006355
	Trre10g03662	271	SMART	mt_12	70	100	IPR003690	GO:0003690\|GO:0006355
	Trre10g03662	271	SMART	mt_12	105	137	IPR003690	GO:0003690\|GO:0006355
	Trre10g03662	271	SMART	mt_12	176	207	IPR003690	GO:0003690\|GO:0006355
	Trre10g03662	271	SMART	mt_12	212	244	IPR003690	GO:0003690\|GO:0006355
	Trre10g03662	271	SMART	mt_12	142	173	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g03662	Trre-Chr10	46117561	46123748	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Trre10g03662		mTERF	1.1e-12	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g03662	K15032		-	gmx:100801948	399.438