Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03656 ATGAGCTTCTTTTCAGATTCTACATCAAGACCATTTCGTACCATGAATGAAGATATGGAGAGTAATGTAGTGACACAACAAAACATTTCATCATCAAGTTCTTCAATGGTGAGAAAGAAATCAGATATAGTTTTGGTGACAAATAATAATGTTAGGTTTCAAATATTTAGAAATGTGATGACAAATATGAAAGAGGTGATGTTGGGTACTAAGCTTGTTGTGCTTTTTCCGGCTGTTCCTTTAGCTGTTGCTGCTGATTTTTATAGCCTTGGAAGGCCTTGGATTTTTGCTTTGAGCTTGCTTGGACTTGCTCCCCTAGCTGAACGAGTCAGCTTCCTCACTGAGCAAATTGCATATTTCACCGGCCCAACAGTTGGAGGGCTTCTAAATGCAACTTGTGGCAATGCAACTGAAATGATAATAGCAATATTAGCACTTCATCAGAACAAAATACATGTTGTGAAGTTCTCCCTGCTTGGTTCCATTCTCTCAAACCTTCTATTGGTTCTAGGCAGCTCACTCCTTTGTGGTGGCTTAGCAAACCTTAAGAGGGAGCAACGATATGACAGAAAACAAGCAGATGTAAACTCATTGCTTTTGTTGTTGGGATTGCTATGCCATTTGTTACCTTTAATGTTCAAATATGCCTTGGCTGGGGGAAATCATTCAATTGCCAGTTGTACTCTTCAATTGTCAAGAGCAAGCAGTGTTGTTATGCTTCTAGCATATGTTGCATACATCTTCTTCCAATTGAAAACTCATCGAAAAATATTTGATGCACAAGAGGTTGAAGATGAAGATGATGAAAAAGCAGTGATAGGATTTTGGAGTGCATTCAGTTGGTTGGTGGGTATGACATTGGTCATATCTGTGCTTTCTGAATATGTTGTGGGAACCATTGAGGCTGCTTCAGAATCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATTTTGCTACCAATTGTTGGGAATGCTGCTGAACATGCTGGTTCAATCATATTTGCTTACAAGAACAAATTGGACATATCTTTAGGTGTTGCTATGGGATCTGCTACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGATTGTTGCATGGATAATGGGTATAAGAATGGATTTGGACTTCAACCTTCTTGAAACTGGATGTCTTGGTTTTGCAATTATTATTACAGCCTTCACTTTACAGGATGGAACTTCACACTACATGAAAGGAGTGATTCTTACTCTCTGTTACATTGTTATTTCTGCATGTTTTTTCGTTCTCAAATCTCCACAAATCAATCAATATGGTATCGCCACGCTTTGA 1311 0.3837 MSFFSDSTSRPFRTMNEDMESNVVTQQNISSSSSSMVRKKSDIVLVTNNNVRFQIFRNVMTNMKEVMLGTKLVVLFPAVPLAVAADFYSLGRPWIFALSLLGLAPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATEMIIAILALHQNKIHVVKFSLLGSILSNLLLVLGSSLLCGGLANLKREQRYDRKQADVNSLLLLLGLLCHLLPLMFKYALAGGNHSIASCTLQLSRASSVVMLLAYVAYIFFQLKTHRKIFDAQEVEDEDDEKAVIGFWSAFSWLVGMTLVISVLSEYVVGTIEAASESWGISVSFISIILLPIVGNAAEHAGSIIFAYKNKLDISLGVAMGSATQISMFVVPLSVIVAWIMGIRMDLDFNLLETGCLGFAIIITAFTLQDGTSHYMKGVILTLCYIVISACFFVLKSPQINQYGIATL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03656 436 FunFam Vacuolar cation/proton exchanger 123 267 - -
Trre10g03656 436 FunFam Vacuolar cation/proton exchanger 268 422 - -
Trre10g03656 436 Gene3D - 269 421 IPR044880 -
Trre10g03656 436 Gene3D - 123 266 IPR044880 -
Trre10g03656 436 NCBIfam calcium/proton exchanger 77 421 IPR004798 GO:0006816|GO:0015369
Trre10g03656 436 NCBIfam calcium/proton exchanger 58 421 - -
Trre10g03656 436 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 26 426 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trre10g03656 436 Pfam Sodium/calcium exchanger protein 94 251 IPR004837 GO:0016020|GO:0055085
Trre10g03656 436 Pfam Sodium/calcium exchanger protein 278 418 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03656 Trre-Chr10 46055162 46060073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03656 25 427 Antiporters AT2G38170 66.910 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03656 K07300 - gmx:100816844 657.907